View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21009_low_23 (Length: 216)
Name: NF21009_low_23
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21009_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 44138786 - 44138974
Alignment:
| Q |
14 |
agatgaaggagcataccagaggaaatttcactaataaaatcataagctaagtaacaccatcattaactt--agtgatatttagaatgttgattgtcttca |
111 |
Q |
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| T |
44138786 |
agatgtaggagcataccagaggaaatttcactaataaaatcataagctaagtaacaccatcattattttttagtgatatttagaatgttgattgtcttca |
44138885 |
T |
|
| Q |
112 |
caatacctagagactggaatgggaaacccttttctttgtaacattataacttgtcaactttacatctcatgcaggagtaatgctgctga |
200 |
Q |
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| T |
44138886 |
caatacctagagactggaatgggaaacccttttctttgtaacattataacttgtcaactttacatctcctgcaggagtaatgctgctga |
44138974 |
T |
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Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 50059063 - 50059251
Alignment:
| Q |
14 |
agatgaaggagcataccagaggaaatttcactaataaaatcataagctaagtaacaccatcattaactta--gtgatatttagaatgttgattgtcttca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
50059063 |
agatgaaggagcataccagaggaaatttcactaataaaatcataagctaagtaacaccatcattaaaaaaaagtgatatttagaatgttgattgtcttca |
50059162 |
T |
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| Q |
112 |
caatacctagagactggaatgggaaacccttttctttgtaacattataacttgtcaactttacatctcatgcaggagtaatgctgctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50059163 |
caatacctagagactggaatgggaaacccttttctttgtaacattataacttgtcaactttacatctcctgcaggagtaatgctgctga |
50059251 |
T |
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