View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21009_low_3 (Length: 470)
Name: NF21009_low_3
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21009_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 1416703 - 1416485
Alignment:
| Q |
18 |
tgtataagaaatattttcctaaatgatgattagtgcacatcatgcatgcacacaaatttcattaattaaaccgctaggattaagtgaaagaagttgggtg |
117 |
Q |
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| T |
1416703 |
tgtataagaaatattttcctaaatgatgattagtgcacatcatgcatgcacacaaatttcattaattaaaccgctaggattaagtgaaagaagttgggtg |
1416604 |
T |
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| Q |
118 |
ttttgggaacatttatgta--cacataggacaaaggaaaggaaagaggggaccctatagtgtgctctattgtcaaaactatactaattatatccactaga |
215 |
Q |
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| T |
1416603 |
ttttgggaacatttatgtacacacataggacaaaggaaaggaaagaggggaccctatagtgtgctctattgtcaaaactatactaattatatccactaga |
1416504 |
T |
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| Q |
216 |
gatatacatataacatata |
234 |
Q |
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| T |
1416503 |
gatatacatataacatata |
1416485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 236 - 460
Target Start/End: Complemental strand, 1416438 - 1416214
Alignment:
| Q |
236 |
ctgaaaataagcccaatgctcagtctgtaccatcaatcttcactatagctgaagagatnnnnnnnnnnnnnnnnnnnnnngaaagtaaacatcttgatca |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1416438 |
ctgaaaataagcccaatgctcagtctgtaccatcaatcttcactatagctgaagagattctctctctctctctctctc--gaaagtaaacatcttgatca |
1416341 |
T |
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| Q |
336 |
ttcctttcttcagttttagctgaagagatnnnnnnnnnnnnnnnnnnn--agttgtgaggaataattatttagttttgttgactaccgacacccttattt |
433 |
Q |
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| T |
1416340 |
ttcctttcttcagttttagctgaagagattctctctctctatctctctctagttgtgaggaatatttatttagttttgttgactaccgacacccttattt |
1416241 |
T |
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| Q |
434 |
ttcccaaaaaagacattctaccttcat |
460 |
Q |
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| T |
1416240 |
ttcccaaaaaagacattctaccttcat |
1416214 |
T |
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