View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21009_low_4 (Length: 442)

Name: NF21009_low_4
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21009_low_4
NF21009_low_4
[»] chr7 (14 HSPs)
chr7 (187-426)||(27848711-27848950)
chr7 (129-395)||(27831374-27831640)
chr7 (129-194)||(27846605-27846670)
chr7 (78-128)||(37548315-37548365)
chr7 (80-128)||(10015277-10015325)
chr7 (78-129)||(36628989-36629040)
chr7 (129-182)||(29578171-29578224)
chr7 (91-128)||(30081983-30082020)
chr7 (129-183)||(3146879-3146933)
chr7 (82-129)||(6188830-6188877)
chr7 (82-129)||(6195346-6195393)
chr7 (163-194)||(17259845-17259876)
chr7 (139-185)||(8575939-8575985)
chr7 (82-128)||(12383100-12383146)
[»] chr6 (3 HSPs)
chr6 (78-128)||(4090316-4090366)
chr6 (92-130)||(20990759-20990797)
chr6 (78-122)||(18617307-18617351)
[»] chr4 (5 HSPs)
chr4 (82-128)||(56366419-56366465)
chr4 (82-129)||(14032325-14032372)
chr4 (82-129)||(14191737-14191784)
chr4 (82-129)||(28142871-28142918)
chr4 (78-128)||(49243584-49243634)
[»] chr3 (4 HSPs)
chr3 (78-130)||(9467000-9467052)
chr3 (80-128)||(33444066-33444114)
chr3 (82-129)||(36641834-36641881)
chr3 (82-128)||(6024178-6024224)
[»] scaffold0065 (1 HSPs)
scaffold0065 (81-128)||(66832-66879)
[»] chr5 (3 HSPs)
chr5 (79-128)||(32699270-32699319)
chr5 (80-128)||(43323249-43323297)
chr5 (82-126)||(38491672-38491716)
[»] chr8 (4 HSPs)
chr8 (82-128)||(40971736-40971782)
chr8 (82-129)||(28517092-28517139)
chr8 (82-128)||(6926981-6927027)
chr8 (82-122)||(12700747-12700786)
[»] chr2 (6 HSPs)
chr2 (300-384)||(12246076-12246160)
chr2 (82-129)||(2566229-2566276)
chr2 (129-200)||(11999006-11999077)
chr2 (82-129)||(45276925-45276972)
chr2 (129-183)||(16662491-16662545)
chr2 (91-128)||(29303806-29303843)
[»] scaffold0311 (1 HSPs)
scaffold0311 (82-128)||(4570-4616)
[»] chr1 (3 HSPs)
chr1 (82-128)||(26222318-26222364)
chr1 (79-129)||(33048686-33048736)
chr1 (82-130)||(21906689-21906737)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 187 - 426
Target Start/End: Original strand, 27848711 - 27848950
Alignment:
Q  187 atcgatgttactccactgtctttaggttggaggctagagcataatcaaatgggtgtagttattcctaggattactactatacctgtcaaaacgacaaaag 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  27848711 atcgatgttactccactgtctttaggttggaggctagagcataatcaaatgggtgtagttattcctaggaatactactatacctgtcaagacgacaaaag 27848810  T
Q  287 ttttttatacaagtgaagataaccaatcctctgccttgatcagtgtttatgagggggagagaactaaggccagtgacaacaatcggcttggctcttttac 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27848811 ttttttatacaagtgaagataaccaatcctctgccttgatcagtgtttatgagggggagagaactaaggccagtgacaacaatcggcttggctcttttac 27848910  T
Q  387 tctctctggattccctcctgccctccgcggccatcctttt 426  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  27848911 tctctctggattccctcctgcccttcgcggccatcctttt 27848950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 129 - 395
Target Start/End: Original strand, 27831374 - 27831640
Alignment:
Q  129 agctgtgcaggctgctttgttgggtgatgacattaagaatgttccaaacttggtgttgatcgatgttactccactgtctttaggttggaggctagagcat 228  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    
T  27831374 agctgtgcaggctgctttgttgagtgatgacattatgaatgttccaaacttggtgttgatcgatgttactccactgtctttaggttggaggcttatacat 27831473  T
Q  229 aatcaaatgggtgtagttattcctaggattactactatacctgtcaaaacgacaaaagttttttatacaagtgaagataaccaatcctctgccttgatca 328  Q
     |||| |||| |||||| |||| ||| | ||| |||||||||||||| | |||||||||||||| ||||| ||||||||||||| ||| || ||| ||||    
T  27831474 gatcacatggctgtagtgattcatagaaataccactatacctgtcaagaagacaaaagttttttttacaactgaagataaccaaacctttgtctttatca 27831573  T
Q  329 gtgtttatgagggggagagaactaaggccagtgacaacaatcggcttggctcttttactctctctgg 395  Q
    | ||||||||||||||||||||||  ||||| ||||||||||  ||||| ||||||| |||| ||||    
T  27831574 gggtttatgagggggagagaactagagccagcgacaacaatctacttggttcttttaatctcactgg 27831640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 27846605 - 27846670
Alignment:
Q  129 agctgtgcaggctgctttgttgggtgatgacattaagaatgttccaaacttggtgttgatcgatgt 194  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  27846605 agctgtgcaggctgctttgttgagtgatgacattaagaatgttccaaacttagtgttgatcgatgt 27846670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 37548365 - 37548315
Alignment:
Q  78 gccctttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37548365 gccctttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 37548315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 10015325 - 10015277
Alignment:
Q  80 cctttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10015325 cctttttcattctatgcctaaggcccctaaaatgttaggaacggccctg 10015277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 36628989 - 36629040
Alignment:
Q  78 gccctttttcattctatgcctaaggcccctaaaatgctaggaacggccctga 129  Q
    |||||| |||||||||| ||||||||||||||||||||||||||| ||||||    
T  36628989 gcccttcttcattctatacctaaggcccctaaaatgctaggaacgaccctga 36629040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 29578171 - 29578224
Alignment:
Q  129 agctgtgcaggctgctttgttgggtgatgacattaagaatgttccaaacttggt 182  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||| |||||    
T  29578171 agctgtgcaggctgctttgttgattgatggcattaagaatgttccaaatttggt 29578224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 30082020 - 30081983
Alignment:
Q  91 ctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30082020 ctatgcctaaggcccctaaaatgctaggaacggccctg 30081983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 3146933 - 3146879
Alignment:
Q  129 agctgtgcaggctgctttgttgggtgatgacattaagaatgttccaaacttggtg 183  Q
    ||||||||| |||||||||||| |||| ||| |||| ||||||||||||||||||    
T  3146933 agctgtgcaagctgctttgttgagtgaagactttaaaaatgttccaaacttggtg 3146879  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 6188877 - 6188830
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctga 129  Q
    |||||||  ||||||||||||||||| ||| |||||||||||||||||    
T  6188877 tttttcaaactatgcctaaggccccttaaacgctaggaacggccctga 6188830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 6195393 - 6195346
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctga 129  Q
    |||||||  ||||||||||||||||| ||| |||||||||||||||||    
T  6195393 tttttcaaactatgcctaaggccccttaaacgctaggaacggccctga 6195346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 194
Target Start/End: Complemental strand, 17259876 - 17259845
Alignment:
Q  163 aagaatgttccaaacttggtgttgatcgatgt 194  Q
    ||||||||||||||||||||||||||||||||    
T  17259876 aagaatgttccaaacttggtgttgatcgatgt 17259845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 8575985 - 8575939
Alignment:
Q  139 gctgctttgttgggtgatgacattaagaatgttccaaacttggtgtt 185  Q
    |||||||||||| |||| | || ||||||||||||||||||||||||    
T  8575985 gctgctttgttgagtgaaggcagtaagaatgttccaaacttggtgtt 8575939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 12383100 - 12383146
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    |||||||| ||||||||||||||| |||||  |||||||||||||||    
T  12383100 tttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 12383146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 4090366 - 4090316
Alignment:
Q  78 gccctttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4090366 gccctttttcattctatgcctaagacccctaaaatgctaggaacggccctg 4090316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 20990759 - 20990797
Alignment:
Q  92 tatgcctaaggcccctaaaatgctaggaacggccctgag 130  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  20990759 tatgcctaaggcccgtaaaacgctaggaacggccctgag 20990797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 18617307 - 18617351
Alignment:
Q  78 gccctttttcattctatgcctaaggcccctaaaatgctaggaacg 122  Q
    |||||||||||| ||||||||||||||| |||||  |||||||||    
T  18617307 gccctttttcatgctatgcctaaggcccgtaaaactctaggaacg 18617351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 56366465 - 56366419
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  56366465 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 56366419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 14032372 - 14032325
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctga 129  Q
    |||||||| ||||||||||||||| |||||  ||||||||||||||||    
T  14032372 tttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 14032325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 14191784 - 14191737
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctga 129  Q
    |||||||  ||||||||||||||| ||||| |||||||||||||||||    
T  14191784 tttttcaaactatgcctaaggcccttaaaacgctaggaacggccctga 14191737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 28142918 - 28142871
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctga 129  Q
    |||||||  ||||||||||||||||| ||| |||||||||||||||||    
T  28142918 tttttcaaactatgcctaaggccccttaaacgctaggaacggccctga 28142871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 49243584 - 49243634
Alignment:
Q  78 gccctttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    ||||||||| || ||||||||||||||| |||||  |||||||||||||||    
T  49243584 gccctttttaatactatgcctaaggcccgtaaaactctaggaacggccctg 49243634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 9467052 - 9467000
Alignment:
Q  78 gccctttttcattctatgcctaaggcccctaaaatgctaggaacggccctgag 130  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  9467052 gccctttttcattctatatctaaggcccctaaaatgctaggaacggccctgag 9467000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 33444066 - 33444114
Alignment:
Q  80 cctttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33444066 cctttttcattctatgtctaaggcccctaaaatgctaggaacggccctg 33444114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 36641834 - 36641881
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctga 129  Q
    |||||||| ||||||||||||||| |||||  ||||||||||||||||    
T  36641834 tttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 36641881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 6024224 - 6024178
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    |||||||  ||||||||||||||| ||||| ||||||||||||||||    
T  6024224 tttttcaaactatgcctaaggcccttaaaacgctaggaacggccctg 6024178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 66832 - 66879
Alignment:
Q  81 ctttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  66832 cttttttattctatgcctaaggcccctaaaatgctaggaacggccctg 66879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 32699270 - 32699319
Alignment:
Q  79 ccctttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  32699270 ccctttttcattctatgcctaaggcccctaaaatactaggaacggtcctg 32699319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 43323297 - 43323249
Alignment:
Q  80 cctttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  43323297 cctttttcattctatacctcaggcccctaaaatgctaggaacggccctg 43323249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 38491672 - 38491716
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccc 126  Q
    |||||||  ||||||||||||||||| ||| ||||||||||||||    
T  38491672 tttttcaaactatgcctaaggccccttaaacgctaggaacggccc 38491716  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 40971736 - 40971782
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||||    
T  40971736 tttttcatattatgcctaaggcccgtaaaatgctaggaacggccctg 40971782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 28517092 - 28517139
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctga 129  Q
    |||||||  ||||||||||||||||| ||| |||||||||||||||||    
T  28517092 tttttcaaactatgcctaaggccccttaaacgctaggaacggccctga 28517139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 6927027 - 6926981
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    |||||||  ||||||||||||||||| ||| ||||||||||||||||    
T  6927027 tttttcaaactatgcctaaggccccttaaacgctaggaacggccctg 6926981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 12700747 - 12700786
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacg 122  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  12700747 tttttcatt-tatgcctaaggctcctaaaatgctaggaacg 12700786  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 12246076 - 12246160
Alignment:
Q  300 tgaagataaccaatcctctgccttgatcagtgtttatgagggggagagaactaaggccagtgacaacaatcggcttggctctttt 384  Q
    ||||||||||||||||  | ||||||| |  ||||| ||||| |||||||| || |||||||||||||||  |||||| ||||||    
T  12246076 tgaagataaccaatccagttccttgattaaggtttacgagggtgagagaacaaaagccagtgacaacaatttgcttggttctttt 12246160  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 2566229 - 2566276
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctga 129  Q
    |||||||  ||||||||||||||| ||||| |||||||||||||||||    
T  2566229 tttttcaaactatgcctaaggcccttaaaacgctaggaacggccctga 2566276  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 11999077 - 11999006
Alignment:
Q  129 agctgtgcaggctgctttgttgggtgatgacattaagaatgttccaaacttggtgttgatcgatgttactcc 200  Q
    |||||| || |||||||||||| |||| ||  |||||||||||||||| |||||||||   |||||||||||    
T  11999077 agctgttcaagctgctttgttgagtgaagatgttaagaatgttccaaatttggtgttgcaggatgttactcc 11999006  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 45276972 - 45276925
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctga 129  Q
    |||||||  ||||||||||||||||| ||| |||||||||||||||||    
T  45276972 tttttcaaactatgcctaaggccccttaaacgctaggaacggccctga 45276925  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 16662491 - 16662545
Alignment:
Q  129 agctgtgcaggctgctttgttgggtgatgacattaagaatgttccaaacttggtg 183  Q
    ||||||||| |||||| ||||| |||| | ||||||| |||||||||||||||||    
T  16662491 agctgtgcaagctgctgtgttgagtgaaggcattaaggatgttccaaacttggtg 16662545  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 29303806 - 29303843
Alignment:
Q  91 ctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  29303806 ctatgcctaaggccccttaaacgctaggaacggccctg 29303843  T

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Target: scaffold0311 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 4616 - 4570
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    |||||||| ||||||||||||||| |||||  |||||||||||||||    
T  4616 tttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 4570  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 26222318 - 26222364
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 128  Q
    |||||||  ||||||||||||||| ||||| ||||||||||||||||    
T  26222318 tttttcaaactatgcctaaggcccttaaaacgctaggaacggccctg 26222364  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 33048736 - 33048686
Alignment:
Q  79 ccctttttcattctatgcctaaggcccctaaaatgctaggaacggccctga 129  Q
    ||||||||||| ||||||||||| ||| |||||  ||||||||||||||||    
T  33048736 ccctttttcatactatgcctaagacccgtaaaactctaggaacggccctga 33048686  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 21906689 - 21906737
Alignment:
Q  82 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctgag 130  Q
    ||||||||  |||||||||||||| |||||| |||||||||| ||||||    
T  21906689 tttttcatattatgcctaaggcccataaaattctaggaacggacctgag 21906737  T

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