View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21009_low_6 (Length: 396)
Name: NF21009_low_6
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21009_low_6 |
 | |
|
| [»] scaffold0270 (3 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0334 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 31375363 - 31374990
Alignment:
| Q |
11 |
tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagaga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31375363 |
tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagaga |
31375264 |
T |
|
| Q |
111 |
tgttttgctcatcagaatttcttcaatctgtgatgcctaccgtcttctatctctctatgcgtgcgtgtgtcttgcttctggcatccattctttccccaaa |
210 |
Q |
| |
|
|||||||||||||| || |||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31375263 |
tgttttgctcatca-aacttctccaatttgtgatgcctactgtcttctatctctctatgcgtgcgtgtgtcttgcttctggcatccattctttccc-aaa |
31375166 |
T |
|
| Q |
211 |
accgtccttttc--cgaaaatcagatcctccttatgtgttgtgcagttggctttatatatccccttccctattctaaagtgccgttttccttttgttcca |
308 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31375165 |
accgtccttttcaccgaaaatcagatc-tccttatgtgttgtgcagctggctttatatatccccttctatattctaaagtgccgttttccttttgttcca |
31375067 |
T |
|
| Q |
309 |
acttgtggcctcgggtcaaccatcacccttgggtcaaagcccaattgccttgtttctaacctcacgtgctttccttt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
31375066 |
acttgtggcctcgggtcaaccatcacccttgggtcaaagcccaatttccttgtttctaacctcacgtgcttcccttt |
31374990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 20473967 - 20474159
Alignment:
| Q |
11 |
tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagaga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20473967 |
tcatgagctagaacagaatcatctatgacctaatcaatagaaattagccactcataatacaagaatttaaacaacaaggttaaaagaaattacaaagagg |
20474066 |
T |
|
| Q |
111 |
tgttttgctcatcagaatttcttcaatctgtgatgcctaccgtcttctatctctctatgcgtgcgtgtgtcttgcttctggcatccattctttcc |
205 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||| || || |||||| ||| ||||||||||||| |
|
|
| T |
20474067 |
tgttttgctcatcagaatttcttctatccgtggtgcataccgtcttctatctctctatgcgtgcatgcgt-ttgctt-tggaatccattctttcc |
20474159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 18970961 - 18971338
Alignment:
| Q |
11 |
tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagaga |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18970961 |
tcatgagttagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagaga |
18971060 |
T |
|
| Q |
111 |
tgttttgctcatcagaatttcttcaatctgtgatgcctaccgtcttctatctctctatgcgtgcgtgtgtcttgcttctggcatccattctttccccaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
18971061 |
tgttttgctcatcagaatttcttcaatccgtgatgcctactgtcttctatctctctatgcgtgcgtgtgtcttgcttctgacatccattcttt-cccaaa |
18971159 |
T |
|
| Q |
211 |
accgtcctttt--ccgaaaatcagatcct--ccttatgtgttgtgcagttggctttatatatccccttccctattctaaagtgccgttttccttttgttc |
306 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||||| | |||||||||||||| |
|
|
| T |
18971160 |
accgtccttttcaccgaaaatcagatcctccccttatgtgttgtgcagctggctttatatatatccttctatattctaaagtgtcattttccttttgttc |
18971259 |
T |
|
| Q |
307 |
caacttgtggcctcgggtcaaccatcacccttgggtcaaagcccaattgccttgtttctaacctcacgtgctttccttt |
385 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18971260 |
caacttgtggcctcgggtcaaacatcacttttgggtcaaagcccaattgccttgtttctaacctcacgtgcttcccttt |
18971338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 18974127 - 18974505
Alignment:
| Q |
11 |
tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagaga |
110 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18974127 |
tcatgagctaatacaaaatcatctataacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaatgaga |
18974226 |
T |
|
| Q |
111 |
tgttttgctcatcagaatttcttcaatctgtgatgcctaccgtcttctatctctct-atgcgtgcgtgtgtcttgcttctggcatccattctttccccaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
18974227 |
tgttttgctcatcagaatttcttcaatccgtgatgcttactgtcttctatctctctaatgcgtgcgtgtgtcttgcttctgacatccattcttt-cccaa |
18974325 |
T |
|
| Q |
210 |
aaccgtcctttt--ccgaaaatcagatcct--ccttatgtgttgtgcagttggctttatatatccccttccctattctaaagtgccgttttccttttgtt |
305 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||||| ||||||||||||||| |
|
|
| T |
18974326 |
aaccgtccttttcaccgaaaatcagatcctccccttatgtgttgtgcagctggctttatatatatccttctatattctaaagtgtcgttttccttttgtt |
18974425 |
T |
|
| Q |
306 |
ccaacttgtggcctcgggtcaaccatcacccttgggtcaaagcccaattgccttgtttctaacctcacgtgctttccttt |
385 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18974426 |
ccaacttgtagcctcgggtcaaccatcacttttgggtcgaagcccaattgccttgtttctaacctcacgtgcttcccttt |
18974505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 2441705 - 2441792
Alignment:
| Q |
58 |
ccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagagatgttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
2441705 |
ccacacataataaaagaatt-aagcaacaaagttaaaagaagttacagagagatgttacactcataggaatttcttcaatatgtgatgc |
2441792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 7570087 - 7570044
Alignment:
| Q |
10 |
atcatgagctagaacagaatcatctatgacctaatcaatggaaa |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7570087 |
atcatgagctagaacagaatcatctatgacctaatcaatagaaa |
7570044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 7576502 - 7576459
Alignment:
| Q |
10 |
atcatgagctagaacagaatcatctatgacctaatcaatggaaa |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7576502 |
atcatgagctagaacagaatcatctatgacctaatcaatagaaa |
7576459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 17545184 - 17545578
Alignment:
| Q |
15 |
gagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagagatgtt |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17545184 |
gagctagaacagaatcatatatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagagatgtt |
17545283 |
T |
|
| Q |
115 |
ttgctcatcagaatttcttcaatctgtgatgcctaccgtcttctatctctctatgcgtgcgtgtgtcttgcttctggcatccattcttt----------- |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||| ||||||||||||||| |||||| |
|
|
| T |
17545284 |
ttgctcatcagaatttcttcaatctgtggtgcctactgtcttctatctctctatacgtgtgtgtgttttgcttctggcatcctttctttccattccgtgc |
17545383 |
T |
|
| Q |
204 |
------ccccaaaaccgtccttt-tccgaaaatcagatcct--ccttatgtgttgtgcagttggctt--tatatatccccttccctattctaaagtgccg |
292 |
Q |
| |
|
||||||||||||||||| ||||||||| ||| || ||||||||||||||||| |||||| |||||||||||||| |||||||||||| || |
|
|
| T |
17545384 |
tctctcccccaaaaccgtcctttcaccgaaaatccgattctccccttatgtgttgtgcagctggctttatatatatccccttctatattctaaagtgtcg |
17545483 |
T |
|
| Q |
293 |
ttttccttttgttccaacttgtggcctcgggtcaacc--atcacccttgggtcaaagcccaattgccttgtttctaacctcacgtgctttccttt |
385 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
17545484 |
ttttccttttattctaacttgtggcctcgggtcaaccatatcacccttgggtcaaagcccaattgccttgtttcttacctcacgtgcttcccttt |
17545578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 50096422 - 50096229
Alignment:
| Q |
11 |
tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagaga |
110 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
50096422 |
tcatgagctataacagaatcatctatgacctaatcaatggaaactagccactcataataaaagactttaaacaacaaggttaaaagaaattacaaagaga |
50096323 |
T |
|
| Q |
111 |
tgttttgctcatcagaatttcttcaatctgtgatgcctaccgtcttctatctctctatgcgtgcgtgtgtcttgcttctggcatccattctttcc |
205 |
Q |
| |
|
|||||||||||||||||||||||| ||| || ||| | |||||||||||||||||||||||||||| || |||||| ||| ||||||||||||| |
|
|
| T |
50096322 |
tgttttgctcatcagaatttcttctatccatggtgcatcccgtcttctatctctctatgcgtgcgtgcgttttgctt-tggaatccattctttcc |
50096229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 23048731 - 23048527
Alignment:
| Q |
1 |
agattacata-tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaa |
99 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
23048731 |
agattacatagtcatgagctagaacaaaatcatctatgacctaatcaatagaaattagccattcataataaaagaatttaaacaacaagattaaaagaaa |
23048632 |
T |
|
| Q |
100 |
ttacaaagagatgttttgctcatcagaatttcttcaatctgtgatgcctaccgtcttctatctctctatgcgtgcgtgtgtcttgcttctggcatccatt |
199 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| ||| ||| ||| |||||||||||||||||||||||||||||| || |||||| ||| ||||||| |
|
|
| T |
23048631 |
ttacaaagaggtgttttgctcatcacaatttcttctatccgtggtgcataccgtcttctatctctctatgcgtgcgtgcgttttgctt-tggaatccatt |
23048533 |
T |
|
| Q |
200 |
ctttcc |
205 |
Q |
| |
|
|||||| |
|
|
| T |
23048532 |
ctttcc |
23048527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43683261 - 43683208
Alignment:
| Q |
1 |
agattacat-atcatgagctagaacagaatcatctatgacctaatcaatggaaa |
53 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
43683261 |
agattacatgatcatgagctagaacagaatcatctatgacctaattaatagaaa |
43683208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 23298921 - 23299007
Alignment:
| Q |
58 |
ccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagagatgttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| ||||||| || ||||| ||||||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
23298921 |
ccacacataataaaagaatt-aagcaacaaagttaaaa-aagttacagagagatgttacactcataggaatttcttcaatatgtgatgc |
23299007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 6922525 - 6922436
Alignment:
| Q |
58 |
ccactcataataaaagaatttaagcaacaaggttaaaagaaattac--aaagagatgttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||||||||| |||| | ||||||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
6922525 |
ccacacataataaaagaatt-aagcaacaaagttaaaagaagttacagagagagatgttacactcataggaatttcttcaatatgtgatgc |
6922436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 11184435 - 11184601
Alignment:
| Q |
11 |
tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagaga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11184435 |
tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaaacaacaaggttaaaagaaattacaaagagg |
11184534 |
T |
|
| Q |
111 |
tgttttgctcatcagaatttcttcaatctgtgatgcctaccgtcttctatctctctatgcgtgcgtg |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
11184535 |
tgttttgctcatcagaatttcttctatccgtggtgcataccgtcttctatctctctatgcgtgcgtg |
11184601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 8434895 - 8434702
Alignment:
| Q |
11 |
tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagaga |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
8434895 |
tcatgagctagaacaggatcatctatgacctgatcaatggaaattaggcactcataataaaagaatgtaaacaacaaggttaaaagaaattacaaagaga |
8434796 |
T |
|
| Q |
111 |
tgttttgctcatcagaatttcttcaatctgtgatgcctaccgtcttctatctctctatgcgtgcgtgtgtcttgcttctggcatccattctttcc |
205 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| ||| ||| |||||||||||||||||||||||||| | |||||| ||||||||||||||||| |
|
|
| T |
8434795 |
tgttttgctcatcagaatttcttttatccgtggtgcatactgtcttctatctctctatgcgtgcgtgcattttgctt-tggcatccattctttcc |
8434702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 21914290 - 21914426
Alignment:
| Q |
11 |
tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattac--aaaga |
108 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| | ||| |
|
|
| T |
21914290 |
tcatgagctagaacaaaatcatctatgacctaatcaatggaaattagccactcatgataaaagaatttaaacaacaaggttaaaacaaattacgaagaga |
21914389 |
T |
|
| Q |
109 |
gatgttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
21914390 |
gatgttttactcatca-aatttcttcaatccgtgatgc |
21914426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28956904 - 28956851
Alignment:
| Q |
1 |
agattacat-atcatgagctagaacagaatcatctatgacctaatcaatggaaa |
53 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
28956904 |
agattacatgatcatgagctagaacagaatcatctatgacctaattaatagaaa |
28956851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 34856880 - 34857025
Alignment:
| Q |
2 |
gattacatatcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaatt |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
34856880 |
gattacatatcatgagctagaagagaatcatctatgacctaatcaatggaaattaaccactcatgataaaagaatttaaacaacaaggttaaaagaaatt |
34856979 |
T |
|
| Q |
102 |
acaa--agagatgttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
34856980 |
acaaagagagatgttttactcatca-aatttcttcaatctgtgatgc |
34857025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 15431772 - 15431685
Alignment:
| Q |
58 |
ccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagagatgttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
15431772 |
ccacacataataaaagaatt-aagcaacaaagttaaaagaagttacagagagatgttacactcataggaatttcttcaatatgtgatgc |
15431685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 15438386 - 15438299
Alignment:
| Q |
58 |
ccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagagatgttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||||| |||||||||||| |||||||| |
|
|
| T |
15438386 |
ccacacataataaaagaatt-aagcaacaaagttaaaagaagttacagagagatgttacactcataggaatttcttcaaaatgtgatgc |
15438299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 27805965 - 27806112
Alignment:
| Q |
1 |
agattacata-tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaa |
99 |
Q |
| |
|
|||||||||| ||||||||||||| | |||||| |||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
27805965 |
agattacataatcatgagctagaataaaatcatgtatgacctaatcaatgaaaattagccactcatgataaaagaatttaaacaacaaggttaaaagaaa |
27806064 |
T |
|
| Q |
100 |
ttacaa--agagatgttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
27806065 |
ttacaaagagagatgttttactcatca-aatttcttcaatccgtgatgc |
27806112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 16880906 - 16880769
Alignment:
| Q |
11 |
tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaa--aga |
108 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | ||| |
|
|
| T |
16880906 |
tcatgagctagaacaaaatcatctatgatctaatcaatggaaattagccactcatgataaaagaatttaaacaacaaggttaaaagaaattacgatgaga |
16880807 |
T |
|
| Q |
109 |
gatg-ttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
16880806 |
gatgtttttactcatca-aatttcttcaatccgtgatgc |
16880769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 17038596 - 17038459
Alignment:
| Q |
11 |
tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaattacaa--aga |
108 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | ||| |
|
|
| T |
17038596 |
tcatgagctagaacaaaatcatctatgatctaatcaatggaaattagccactcatgataaaagaatttaaacaacaaggttaaaagaaattacgatgaga |
17038497 |
T |
|
| Q |
109 |
gatg-ttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
17038496 |
gatgtttttactcatca-aatttcttcaatccgtgatgc |
17038459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 3252075 - 3251978
Alignment:
| Q |
1 |
agattacata-tcatgagctagaacagaatcatctatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaaga |
97 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||| |||| |||||||||||||| |||||| |||||||| |
|
|
| T |
3252075 |
agattacatagtcatgagctagaacaaaattatctatgacctaatcaatgaaaattagccaatcatgataaaagaatttaaacaacaaaattaaaaga |
3251978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0270 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: scaffold0270
Description:
Target: scaffold0270; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 3852 - 3939
Alignment:
| Q |
58 |
ccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagagatgttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
3852 |
ccacacataataaaagaatt-aagcaacaaagttaaaagaagttacagagagatgttacactcataggaatttcttcaatatgtgatgc |
3939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0270; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 10982 - 11069
Alignment:
| Q |
58 |
ccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagagatgttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
10982 |
ccacacataataaaagaatt-aagcaacaaagttaaaagaagttacagagagatgttacactcataggaatttcttcaatatgtgatgc |
11069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0270; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 492 - 579
Alignment:
| Q |
58 |
ccactcataataaaagaatttaagcaacaaggttaaaagaaattacaaagagatgttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||||| ||||||||||||| ||| |||| |
|
|
| T |
492 |
ccacacataataaaagaatt-aagcaacaaagttaaaagaagttacagagagatgttacactcataggaatttcttcaatatgtaatgc |
579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 292722 - 292632
Alignment:
| Q |
58 |
ccactcataataaaagaattta--agcaacaaggttaaaagaaattacaaagagatgttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
|||| ||||||||||||||| | |||||||| |||||||||| ||| | ||||||||| |||||| ||||||||||||| |||||||| |
|
|
| T |
292722 |
ccacacataataaaagaattaagaagcaacaaagttaaaagaagttatagagagatgttacgctcataggaatttcttcaatatgtgatgc |
292632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 19026 - 18959
Alignment:
| Q |
79 |
aagcaacaaggttaaaagaaattacaaagagatgttttgctcatcagaatttcttcaatctgtgatgc |
146 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||| |||||| ||||||||||||| |||||||| |
|
|
| T |
19026 |
aagcaacaaagttaaaagaagttacggagagatgttacgctcataggaatttcttcaatatgtgatgc |
18959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University