View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2100R-Insertion-10 (Length: 266)
Name: NF2100R-Insertion-10
Description: NF2100R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2100R-Insertion-10 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 165151 - 165421
Alignment:
| Q |
8 |
aatatattcagtaaataacttttgtatcaatacaatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaac |
107 |
Q |
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| T |
165151 |
aatatattcagtaaataacttttgtatcaatacaatgcagacttttgggagccaagtatgggatactagttttgccattcaagctttgcttgccaccaac |
165250 |
T |
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| Q |
108 |
ctaattgaggaaactgctcctgcacttgtaaaaggacatgatttcatcaagaaatctcag----------------gtatgcttaattttgatgacaaac |
191 |
Q |
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| T |
165251 |
ctaattgaggaaactgctcctgcacttgtaaaaggacatgatttcatcaagaaatctcaggtatgcttaattttgagtatgcttaattttgatgacaaac |
165350 |
T |
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| Q |
192 |
atatgacatagtcacaattctttccttcaaaataaggaaagtaaactcccaaatgaaccaatcttgttaat |
262 |
Q |
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| T |
165351 |
atatgacatagtcacaattctttccttcaaaataaggaaagtaaactcccaaatgaaccaatctagttaat |
165421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 104550 - 104746
Alignment:
| Q |
13 |
attcagtaaataacttttgtatcaatacaatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaat |
112 |
Q |
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| T |
104550 |
attcattaaataattttcctgtcaatacaatgcagagttttggtagccaagaatgggatgctggttttgccgttcaagctttgcttgccgctaacctaaa |
104649 |
T |
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| Q |
113 |
tgaggaaactgctcctgcacttgtaaaaggacatgatttcatcaagaaatctcaggtatgcttaattttgatgacaaacatatgacatagtcacaat |
209 |
Q |
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| T |
104650 |
tgatgaaatcgaacctgcacttgccaaaggacatgatttcattaagaaatctcaggtatgtttaattttgatgacaaacatataatataatcacaat |
104746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 41 - 181
Target Start/End: Complemental strand, 5669666 - 5669526
Alignment:
| Q |
41 |
aatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctcctgcacttgtaaaa |
140 |
Q |
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| T |
5669666 |
aatgcagagttttggtagccaaacatgggatgctagtttgatcattgaagctttgcttgccactaacctaactgaggatattggtccaacactggcaaaa |
5669567 |
T |
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| Q |
141 |
ggacatgatttcatcaagaaatctcaggtatgcttaatttt |
181 |
Q |
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| T |
5669566 |
ggacatgaattcatcaagaaatctcaggtatgcttaatttt |
5669526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 181
Target Start/End: Complemental strand, 5690323 - 5690183
Alignment:
| Q |
41 |
aatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctcctgcacttgtaaaa |
140 |
Q |
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| T |
5690323 |
aatgcagagttttggtagccaaacatgggatgctagtttgatcattcaagctttgcttgccactaacctaattgaggatattggtccaacacttgcaaaa |
5690224 |
T |
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| Q |
141 |
ggacatgatttcatcaagaaatctcaggtatgcttaatttt |
181 |
Q |
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| T |
5690223 |
ggacataaattcatcaagaattctcaggtatgtttagtttt |
5690183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 181
Target Start/End: Complemental strand, 5721920 - 5721780
Alignment:
| Q |
41 |
aatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctcctgcacttgtaaaa |
140 |
Q |
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| T |
5721920 |
aatgcagagttttggtagccaaacatgggatgctagtttcatcattcaagctttgcttgccactaacctagttgaggatattggttcaacacttgcaaaa |
5721821 |
T |
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| Q |
141 |
ggacatgatttcatcaagaaatctcaggtatgcttaatttt |
181 |
Q |
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| T |
5721820 |
ggacatgaatacatcaagaattctcaggtatgtttagtttt |
5721780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 12137042 - 12136906
Alignment:
| Q |
35 |
caatacaatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctcctgcactt |
134 |
Q |
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| T |
12137042 |
caatataatgcagagttttggtagccaaaaatgggatgttggttttgccattcaaactttgcttgcgtctaacttaatcgaggaaattggtcctgcactt |
12136943 |
T |
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| Q |
135 |
gtaaaaggacatgatttcatcaagaaatctcaggtat |
171 |
Q |
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| T |
12136942 |
gcaaaagcacatgatttcatcaagaaatctcaggtat |
12136906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 171
Target Start/End: Original strand, 13053143 - 13053277
Alignment:
| Q |
37 |
atacaatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctcctgcacttgt |
136 |
Q |
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| T |
13053143 |
atacaatgtagagttttggtagtcaagaatgggatgcaggttttgctgttcaagctttgcttgccacaaacttaattgaagaaattggtcctgcacttgc |
13053242 |
T |
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| Q |
137 |
aaaaggacatgatttcatcaagaaatctcaggtat |
171 |
Q |
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| T |
13053243 |
cagaggacatgacttcatcaagaaatctcaggtat |
13053277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 91970 - 91815
Alignment:
| Q |
27 |
ttttgtatcaatacaatgcagacttttggtagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctc |
126 |
Q |
| |
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|||| ||||||||||| |||| ||| |||||||||| |||| ||||||||||| | ||||||||||||||||||| ||||| |||||||| || | |
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| T |
91970 |
ttttctatcaatacaactcagagtttgggtagccaaggatggaatactagtttttctgttcaagctttgcttgccactggcctaactgaggaaattggcc |
91871 |
T |
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| Q |
127 |
ctgcacttgtaaaaggacatgatttcatcaagaaatctcaggtatgcttaattttg |
182 |
Q |
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| T |
91870 |
cagtacttgcgaaaggtcatgatttcatcaagaaatcacaggtaagtttaattttg |
91815 |
T |
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