View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2100R-Insertion-3 (Length: 960)

Name: NF2100R-Insertion-3
Description: NF2100R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2100R-Insertion-3
NF2100R-Insertion-3
[»] chr5 (38 HSPs)
chr5 (8-548)||(8548164-8548704)
chr5 (496-947)||(8548760-8549227)
chr5 (8-213)||(8677633-8677838)
chr5 (12-321)||(8535225-8535530)
chr5 (12-228)||(9074797-9075010)
chr5 (8-213)||(8636695-8636900)
chr5 (8-213)||(8644040-8644245)
chr5 (133-322)||(1600478-1600666)
chr5 (521-665)||(8534620-8534764)
chr5 (521-613)||(8528107-8528199)
chr5 (117-209)||(8528778-8528870)
chr5 (518-602)||(8640663-8640747)
chr5 (92-173)||(8641242-8641323)
chr5 (496-548)||(8548706-8548758)
chr5 (781-868)||(8527857-8527943)
chr5 (792-871)||(9002278-9002356)
chr5 (521-571)||(1601066-1601116)
chr5 (118-184)||(2845207-2845273)
chr5 (118-184)||(2857028-2857094)
chr5 (118-204)||(9003307-9003393)
chr5 (427-487)||(1600713-1600773)
chr5 (118-184)||(2874638-2874704)
chr5 (522-608)||(8636299-8636385)
chr5 (281-363)||(9075030-9075112)
chr5 (253-405)||(8528602-8528754)
chr5 (519-572)||(8550854-8550907)
chr5 (519-596)||(8677535-8677612)
chr5 (118-186)||(2905127-2905195)
chr5 (443-487)||(8535064-8535108)
chr5 (521-560)||(9002574-9002613)
chr5 (781-868)||(9075311-9075397)
chr5 (794-871)||(8643503-8643579)
chr5 (538-611)||(9075167-9075240)
chr5 (520-596)||(8643772-8643848)
chr5 (800-867)||(8640449-8640515)
chr5 (359-402)||(8641062-8641105)
chr5 (353-472)||(9003050-9003168)
chr5 (360-405)||(1600667-1600712)
[»] chr6 (2 HSPs)
chr6 (8-305)||(16716086-16716392)
chr6 (518-672)||(16715534-16715689)
[»] scaffold0627 (2 HSPs)
scaffold0627 (8-213)||(4488-4692)
scaffold0627 (518-672)||(3676-3828)
[»] chr7 (5 HSPs)
chr7 (521-611)||(48362528-48362618)
chr7 (17-184)||(35779694-35779861)
chr7 (117-307)||(48362031-48362223)
chr7 (794-871)||(35777367-35777444)
chr7 (518-612)||(35777511-35777605)
[»] chr1 (3 HSPs)
chr1 (81-210)||(5130637-5130766)
chr1 (533-602)||(5130051-5130120)
chr1 (414-487)||(5130336-5130408)
[»] chr4 (4 HSPs)
chr4 (117-209)||(9442939-9443031)
chr4 (781-868)||(9442024-9442110)
chr4 (253-386)||(9442782-9442915)
chr4 (521-594)||(9442287-9442360)


Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 8 - 548
Target Start/End: Original strand, 8548164 - 8548704
Alignment:
Q  8 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8548164 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagtcaaagattttcgaattcatggctcttct 8548263  T
Q  108 tcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagt 207  Q
    ||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548264 tcacaatcatttgaagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagt 8548363  T
Q  208 aagaatattgtagcttctaatttaatatttcagattgggcaatctaatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataaga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548364 aagaatattgtagcttctaatttaatatttcagattgggcaatctaatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataaga 8548463  T
Q  308 tgagtattcaaagggtcatgtgtgaattttttgtgttactgcttatatttaaacttcctattttggcattctatttggataaaggaaggcttgttgtttt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  8548464 tgagtattcaaagggtcatgtgtgaattttttgtgttactgcttatatttaaacttcctattttggcattctatttggataaaggaaggcttgttgttaa 8548563  T
Q  408 gtacagatcttctcacttaaggttatgatgatttctcaatcatttgcttttacaactaatatatttatggtgttgtttatttccttactttaattacgta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8548564 gtacagatcttctcacttaaggttatgatgatttctcaatcatttgcttttacaactaatatatttatggtgttgtttatttccttactttaattacata 8548663  T
Q  508 gctatcctttcctaatattgttttaatttatataggtgtgc 548  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8548664 gctatcctttcctaatattgttttaatttatataggtgtgc 8548704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 496 - 947
Target Start/End: Original strand, 8548760 - 8549227
Alignment:
Q  496 tttaattacgtagctatcctttcctaatattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaac 595  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8548760 tttaattacatagctatcctttcctaatattgttttaatttatataggtgtgtaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaac 8548859  T
Q  596 agattgtttgagacttgacacacatggattcttcattaccttatggtgacatgataaatatatcttcctcttcatcctat-------------agaatcc 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||    
T  8548860 agattgtttgagacttgacacacatggattcttcattaccttatggtgacatgataaatatatcttcctcttcatcctatggtgtagaagtgtagaatcc 8548959  T
Q  683 agtgaagagtgtgtttcctataagcagagtatgtttgttttcgcattgattggtgttatgatcctttccctggtacagttttaaccacattagcttaatt 782  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548960 agtgaagagtgtgtttcctataagaatagtatgtttgttttcgcattgattggtgttatgatcctttccctggtacagttttaaccacattagcttaatt 8549059  T
Q  783 agtctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgactaaacatagctt 882  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8549060 agcctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgactaaacatagctt 8549159  T
Q  883 aattttcataaagttatgatttttg-aaacatacatatctc-ttttaggatgc-aatgatgtcttttt 947  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  8549160 aattttcataaagttatgatttttgaaaacatacatatctctttttaggatgcaaatgatgtcttttt 8549227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 8677838 - 8677633
Alignment:
Q  8 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttct 107  Q
    ||||||||||||| |||||||||||||||| |   ||||| |||  |||||| | ||||| ||| ||||  | |||| |||||||||||| ||| |||||    
T  8677838 agagggtgctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatggtttcaaagtttttcgaattcacggcacttct 8677739  T
Q  108 tcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagt 207  Q
    || ||||   ||||| |||||||| || ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||    
T  8677738 tccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggt 8677639  T
Q  208 aagaat 213  Q
    ||||||    
T  8677638 aagaat 8677633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 8535530 - 8535225
Alignment:
Q  12 ggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttcttcag 111  Q
    ||||||||| |||||||||||||||| |   |||||||||  |||||| | || || ||||||||| |  ||| |||||||||| | ||   |  ||||     
T  8535530 ggtgctgccatattgttatatcattcctgcaattgttttatctactatgaacctgagaaatatggattcgaagtttttcgaatttacgggagtagttcaa 8535431  T
Q  112 aatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaaga 211  Q
    | |  ||||||||||| ||| | |||||||||||||| ||||||||||||||  ||||||| |||||||||||||| |||||||||||||||| ||||||    
T  8535430 atttttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggtgacaatattgaggttctgaatatccactcaaggtaaga 8535331  T
Q  212 atattgtagcttcta--atttaatatttcagattgggcaatctaatctgatggttgatgctcccata-aaaatcatagtaattaattttaatcataagat 308  Q
    |   |||||||||||  |||| || |||   |||  |||||  ||||||||||||||||||||| || ||| ||||||||||| |||||||||||||||     
T  8535330 a---tgtagcttctaagattttattttt---att-tgcaattgaatctgatggttgatgctcccttacaaagtcatagtaattgattttaatcataagac 8535238  T
Q  309 gagtattcaaagg 321  Q
    |||||||||||||    
T  8535237 gagtattcaaagg 8535225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 9074797 - 9075010
Alignment:
Q  12 ggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttcttcag 111  Q
    ||||||||| |||||||||||||||  |   |||||||||  | |||| | || || ||||||||| | |||| |||||||||||||||   |  ||||     
T  9074797 ggtgctgccatattgttatatcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagtttttcgaattcatgggagtcattcaa 9074896  T
Q  112 aatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaaga 211  Q
    | |  ||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  9074897 agttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgtcttgaaaggagacaatatcgaggtgctgaatatccactcaaggtaaga 9074996  T
Q  212 atattgtagcttctaat 228  Q
    |   |||||||||||||    
T  9074997 a---tgtagcttctaat 9075010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 8636900 - 8636695
Alignment:
Q  8 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttct 107  Q
    |||||| |||||| |||||||||||||||| |   ||||| |||  |||||| | ||||| |||  |||  | |||| |||| ||||||| ||| |||||    
T  8636900 agagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacttggtttcaaagtttttagaattcaaggcacttct 8636801  T
Q  108 tcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagt 207  Q
    || || |   ||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||    
T  8636800 tccgagtttgttgaaataattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggt 8636701  T
Q  208 aagaat 213  Q
     |||||    
T  8636700 tagaat 8636695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 8644245 - 8644040
Alignment:
Q  8 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttct 107  Q
    |||||| |||||| |||||||||||||||| |   ||||| |||  |||||| | ||| | ||| |||   | |||| |||||||||||| |||  ||||    
T  8644245 agagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccaagaaacatgctttcaaagtttttcgaattcacggcatttct 8644146  T
Q  108 tcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagt 207  Q
    || ||||   ||||| |||||||| || ||||||||||||||||||||||||||||  ||||||||||||||| |||| |||||||||||||||||| ||    
T  8644145 tccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggt 8644046  T
Q  208 aagaat 213  Q
    ||||||    
T  8644045 aagaat 8644040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 133 - 322
Target Start/End: Original strand, 1600478 - 1600666
Alignment:
Q  133 atattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaagaatattgtagcttctaatttaa 232  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||   ||||||||| ||| |      
T  1600478 atattccaagtctaatttcattgaaggatgtcttgaaaggggacaatattgaggtgctgaatatccactcaaggtaagaa---tgtagcttcaaatattt 1600574  T
Q  233 tatttcagattgg----gcaatctaatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaaggg 322  Q
    |||||   |||||      ||||| || ||||||| |||| ||||||| || |||||||||||||||||||||||||||  ||| |||||||||    
T  1600575 tattt-ttattggcgtttgaatctgat-tgatggtcgatgttcccatacaagtcatagtaattaattttaatcataagacaagttttcaaaggg 1600666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 521 - 665
Target Start/End: Complemental strand, 8534764 - 8534620
Alignment:
Q  521 aatattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttg---tctcaacagattgtttgagacttgacaca 617  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |||| |||   ||||||| |||||||||||||||||        
T  8534764 aatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaaaggaagttctttctttgcgatctcaac-gattgtttgagacttgaagtt 8534666  T
Q  618 catggattcttcattaccttatggtgacatgataaatatatcttcctc 665  Q
    ||||  || ||||| | ||||||||||| |||||||||||||| ||||    
T  8534665 catg--tttttcatcatcttatggtgacttgataaatatatctgcctc 8534620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 521 - 613
Target Start/End: Complemental strand, 8528199 - 8528107
Alignment:
Q  521 aatattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaacagattgtttgagacttga 613  Q
    |||||||||||||||| ||||||||||||||||||||||| | || |||||| || ||| ||||  |||||||||||||||||||||||||||    
T  8528199 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagacttga 8528107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 8528870 - 8528778
Alignment:
Q  117 tttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaa 209  Q
    ||||||||||| ||| | |||||||||||||| ||||||||||||||  ||||||||| |||||||||||| |||||||||||||||| ||||    
T  8528870 tttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 8528778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 518 - 602
Target Start/End: Complemental strand, 8640747 - 8640663
Alignment:
Q  518 cctaatattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaacagattgt 602  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||| |||||| |||| |||||||||| ||||||    
T  8640747 cctaatattgttttaatttatataggtgtgcaaagtttaaattgggagaagaaaatgaagttttttccttgtctcaacggattgt 8640663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 8641323 - 8641242
Alignment:
Q  92 aattcatggctcttcttcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaagga 173  Q
    |||||||||  ||| |||||||  | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  8641323 aattcatgggacttgttcagaaagagttgaagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaagga 8641242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 496 - 548
Target Start/End: Original strand, 8548706 - 8548758
Alignment:
Q  496 tttaattacgtagctatcctttcctaatattgttttaatttatataggtgtgc 548  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8548706 tttaattacatagctatcctttcctaatattgttttaatttatataggtgtgc 8548758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 781 - 868
Target Start/End: Complemental strand, 8527943 - 8527857
Alignment:
Q  781 ttagtctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatg 868  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||| | | ||||||||| ||||| |  ||||||||||||||||    
T  8527943 ttagactttgttatgtaatattggtgttattttatataggtgtgcaaa-tattaaattgcatgaagaagatgaagatcttgaatgatg 8527857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 792 - 871
Target Start/End: Complemental strand, 9002356 - 9002278
Alignment:
Q  792 tatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgact 871  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||||||| | |||||||  |||||||||||||| ||||    
T  9002356 tatgtaatattggtgttgttttgtataggtgtgcaaagttt-aaattgcgtgaagaaaatgaagatcttgaatgacgact 9002278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 521 - 571
Target Start/End: Original strand, 1601066 - 1601116
Alignment:
Q  521 aatattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaa 571  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  1601066 aatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaa 1601116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 2845207 - 2845273
Alignment:
Q  118 ttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattga 184  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||| |||||||||||||| ||||    
T  2845207 ttgaagtaattgaatatattccaagtctaatatcattgaacgatgtcgtgaaaggagacaatgttga 2845273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 2857028 - 2857094
Alignment:
Q  118 ttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattga 184  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||| |||||||||||||| ||||    
T  2857028 ttgaagtaattgaatatattccaagtctaatatcattgaacgatgtcgtgaaaggagacaatgttga 2857094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 9003393 - 9003307
Alignment:
Q  118 ttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaa 204  Q
    |||||||||||||| |||||||||||||||||||||||||||| |   | || ||||||||| |||||||| ||||| || ||||||    
T  9003393 ttgaagtaattccacatattccaagtctaatctcattgaaggaggctgtaaatggagacaatgttgaggtgttgaatgtctactcaa 9003307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 427 - 487
Target Start/End: Original strand, 1600713 - 1600773
Alignment:
Q  427 aggttatgatgatttctcaatcatttgcttttacaactaatatatttatggtgttgtttat 487  Q
    ||||| ||||| || | |||||| |||||||||||||||||||||||||||||||||||||    
T  1600713 aggttgtgatgtttccgcaatcaattgcttttacaactaatatatttatggtgttgtttat 1600773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 2874638 - 2874704
Alignment:
Q  118 ttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattga 184  Q
    |||||||||||  |||||||| ||||||||| |||||||| |||||| |||||||||||||| ||||    
T  2874638 ttgaagtaattgaatatattcaaagtctaatatcattgaacgatgtcgtgaaaggagacaatgttga 2874704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 608
Target Start/End: Complemental strand, 8636385 - 8636299
Alignment:
Q  522 atattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaacagattgtttgaga 608  Q
    |||||||||| ||| |||||||||||||||  || |||| | ||||||||| |||||| |||| ||||||||||| | |||||||||    
T  8636385 atattgttttgattgatataggtgtgcaaatgttgaattgccggaagaaaatgaagttctttccttgtctcaacaaactgtttgaga 8636299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 363
Target Start/End: Original strand, 9075030 - 9075112
Alignment:
Q  281 tcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgcttatatttaaactt 363  Q
    |||||||||||||||||||||||||||||||| ||||||||| |  | |||| ||| || ||||||  ||||||||| |||||    
T  9075030 tcatagtaattaattttaatcataagatgagttttcaaagggactcgagtgagtttcttatgttaccacttatattttaactt 9075112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 253 - 405
Target Start/End: Complemental strand, 8528754 - 8528602
Alignment:
Q  253 aatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgctta 352  Q
    |||||||||||||||||| || || || ||||||||||| ||| ||||||| ||  |||||||||||||| | ||||| | |||  | ||||||  ||||    
T  8528754 aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttac-actta 8528656  T
Q  353 ta-tttaaacttcctattttggcattctatttggataaaggaaggcttgttgtt 405  Q
    || ||||||||| |||||||  ||||| ||||||| ||| |||| | |||||||    
T  8528655 tattttaaacttactatttttccattccatttggagaaaagaagacatgttgtt 8528602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 519 - 572
Target Start/End: Original strand, 8550854 - 8550907
Alignment:
Q  519 ctaatattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaaa 572  Q
    ||||||||||| |||||||| |||||||||||||| |||||| |||||||||||    
T  8550854 ctaatattgttataatttatttaggtgtgcaaagtataaattgcaggaagaaaa 8550907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 519 - 596
Target Start/End: Complemental strand, 8677612 - 8677535
Alignment:
Q  519 ctaatattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaaca 596  Q
    ||||||||||||||||| |||||||||||||||  || |||| | ||||||||| |||||| |||| ||||| |||||    
T  8677612 ctaatattgttttaattgatataggtgtgcaaatgttgaattgcgggaagaaaatgaagttctttccttgtcacaaca 8677535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 2905127 - 2905195
Alignment:
Q  118 ttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgagg 186  Q
    ||||||| |||| | |||||||||||||||| |||||||| |||||| |||| ||||||||| ||||||    
T  2905127 ttgaagttattcaacatattccaagtctaatatcattgaaagatgtcgtgaatggagacaatgttgagg 2905195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 443 - 487
Target Start/End: Complemental strand, 8535108 - 8535064
Alignment:
Q  443 tcaatcatttgcttttacaactaatatatttatggtgttgtttat 487  Q
    ||||||||||||||||||||||||||||||||||  |||||||||    
T  8535108 tcaatcatttgcttttacaactaatatatttatgaagttgtttat 8535064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 521 - 560
Target Start/End: Complemental strand, 9002613 - 9002574
Alignment:
Q  521 aatattgttttaatttatataggtgtgcaaagtttaaatt 560  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  9002613 aatattgttgtaatttatataggtgtgcaaagtttaaatt 9002574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 781 - 868
Target Start/End: Original strand, 9075311 - 9075397
Alignment:
Q  781 ttagtctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatg 868  Q
    |||| ||||||| ||||||| || ||||||||| |||||| ||||||| |||||| |||||| |||| ||  ||||||||||||||||    
T  9075311 ttagactttgttgtgtaatactgttgttattttatataggtgtgcaaattttaaa-ttgcatgaagagaatgaagatcttgaatgatg 9075397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 794 - 871
Target Start/End: Complemental strand, 8643579 - 8643503
Alignment:
Q  794 tgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgact 871  Q
    |||||||||||||||||||| |||||| ||||||| ||| |||||  || || ||||  |||||||||||||||||||    
T  8643579 tgtaatattggtgttattttatataggtgtgcaaa-ttttaaattatatgaaaaaaatgaagatcttgaatgatgact 8643503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 538 - 611
Target Start/End: Original strand, 9075167 - 9075240
Alignment:
Q  538 tataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaacagattgtttgagactt 611  Q
    ||||||||||||||||||||||| | ||||||||  || ||| ||||  ||| |||| ||||||||||||||||    
T  9075167 tataggtgtgcaaagtttaaattgcgggaagaaagggacgttctttctctgtttcaagagattgtttgagactt 9075240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 520 - 596
Target Start/End: Complemental strand, 8643848 - 8643772
Alignment:
Q  520 taatattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaaca 596  Q
    |||||||||||||||| |||||||||||||||  | |||||  | |||||||| |||||| |||| ||||| |||||    
T  8643848 taatattgttttaattgatataggtgtgcaaatgtcaaattggaagaagaaaatgaagttctttccttgtcacaaca 8643772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 800 - 867
Target Start/End: Complemental strand, 8640515 - 8640449
Alignment:
Q  800 attggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgat 867  Q
    |||||||||||||| |||||| ||||||| ||| ||||||| | |||||||  |||||||||||||||    
T  8640515 attggtgttattttatataggtgtgcaaaattt-aaattgcgtgaagaaaatgaagatcttgaatgat 8640449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 402
Target Start/End: Complemental strand, 8641105 - 8641062
Alignment:
Q  359 aacttcctattttggcattctatttggataaaggaaggcttgtt 402  Q
    |||||||| |||||| ||||||||||||||||||||| ||||||    
T  8641105 aacttcctgttttggtattctatttggataaaggaagacttgtt 8641062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 472
Target Start/End: Complemental strand, 9003168 - 9003050
Alignment:
Q  353 tatttaaacttcctattttggcattctatttggataaaggaaggcttgttgttttgtacagatcttctcacttaaggttatgatgatttctcaatcattt 452  Q
    ||||| |||||||| ||||  ||||||||||||| ||||||||| ||||||||   || ||||||  |||| ||||||| | ||| ||  ||||||| ||    
T  9003168 tattttaacttccttttttc-cattctatttggagaaaggaaggtttgttgttacctatagatctcatcacctaaggttgtcatgtttgatcaatcaatt 9003070  T
Q  453 gcttttacaactaatatatt 472  Q
    | ||||||||||||| ||||    
T  9003069 gattttacaactaatctatt 9003050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 1600667 - 1600712
Alignment:
Q  360 acttcctattttggcattctatttggataaaggaaggcttgttgtt 405  Q
    ||||||||||||| |||||| |||||| |||||||| |||||||||    
T  1600667 acttcctattttgccattctgtttggagaaaggaagacttgttgtt 1600712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 16716392 - 16716086
Alignment:
Q  8 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttct 107  Q
    ||||||||||| |||||||||||||||||||   |||||||||||||||||| | ||  |||||||||| || ||   ||||||||||||||| | ||||    
T  16716392 agagggtgctggcgtattgttatatcattcaaatgattgttttacttactatgagcctaataaatatggtgtcaagcgttttcgaattcatgggtattct 16716293  T
Q  108 tca------------gaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaata 195  Q
     ||            | ||  ||| ||||||||||| |||||||||||||||||||||||||||||| | |||||||||| |||||||||||| ||||||    
T  16716292 gcaaggtattttaaaggattttttaaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaata 16716193  T
Q  196 tccactcaaagtaagaatattgtagcttctaatttaatatttcagattgggcaatctaatctgatggttgatgctcccataaaaatcatagtaattaatt 295  Q
    ||||||||| |||||||   | ||  || ||| | ||| |||| |||| ||||||  ||| ||||||||||   ||||||||||||||||||||||||||    
T  16716192 tccactcaaggtaagaa---tctaatttataactcaatttttctgatttggcaattgaatttgatggttgacagtcccataaaaatcatagtaattaatt 16716096  T
Q  296 ttaatcataa 305  Q
    ||||| ||||    
T  16716095 ttaattataa 16716086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 518 - 672
Target Start/End: Complemental strand, 16715689 - 16715534
Alignment:
Q  518 cctaatattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttgtc---tcaacagattgtttgagacttgac 614  Q
    ||||||||||||||  | |||||||||||| |||||||||||| | ||||||||||   ||||| ||||||||   | ||||||||||||||  ||||||    
T  16715689 cctaatattgttttcttctatataggtgtggaaagtttaaattgcgggaagaaaaaattgttatctcgttgtcgtcttaacagattgtttga--cttgac 16715592  T
Q  615 acacatggattcttcattaccttatggtgacatgataaatatatcttcctcttcatcc 672  Q
    | ||| ||||||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  16715591 aaacacggattcttcattatcttatgttgacttgataaatatatcttcctcttcatcc 16715534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 4692 - 4488
Alignment:
Q  8 agagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttct 107  Q
    |||||||||||| ||||||||| |||||||||  ||| ||||||||||||||  ||   || ||||| |||| ||   |||||||||||||||   ||||    
T  4692 agagggtgctgctgtattgttacatcattcatatgatcgttttacttactatggccta-atgaatatcgagtcaagttttttcgaattcatggggattct 4594  T
Q  108 tcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagt 207  Q
      || ||  ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| ||    
T  4593 aaaggatattttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggt 4494  T
Q  208 aagaat 213  Q
    ||||||    
T  4493 aagaat 4488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 518 - 672
Target Start/End: Complemental strand, 3828 - 3676
Alignment:
Q  518 cctaatattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaacagattgtttgagacttgacaca 617  Q
    ||||||| ||||||   ||||||||||||| |||||||||||| |  |||||||||  ||||||  ||||||||||||| |||  ||||||||||||| |    
T  3828 cctaatactgttttctattatataggtgtggaaagtttaaattgcgtgaagaaaaaatagttatcacgttgtctcaacaaatt--ttgagacttgacaaa 3731  T
Q  618 catggattcttcattaccttatggtgacatgataaatatatcttcctcttcatcc 672  Q
    || |||||||||||||||||||| |||| |||||||||||| |||||||||||||    
T  3730 cacggattcttcattaccttatgttgacttgataaatatatattcctcttcatcc 3676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 7e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 521 - 611
Target Start/End: Original strand, 48362528 - 48362618
Alignment:
Q  521 aatattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaacagattgtttgagactt 611  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||  |||||||||||||||||||||||||    
T  48362528 aatattggtttaatttatataggtgtgcaaagtttaaattgcaggaagaaaaggaaggtatatctctgtctcaacagattgtttgagactt 48362618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 35779861 - 35779694
Alignment:
Q  17 tgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagttaaagattttcgaattcatggctcttcttcagaatca 116  Q
    |||| ||||||||||||||||||   |||||||||  |||| | | || || |||||||||   |||| ||||||||||| |||  ||  |||| ||||     
T  35779861 tgccatattgttatatcattcatgcaattgttttatctactttgaacctgagaaatatggatacaaagtttttcgaattcgtgggactcgttcaaaatct 35779762  T
Q  117 tttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattga 184  Q
     |||||||||||||| |||||||||||||||| ||||||||||||||  | |||||||||||||||||    
T  35779761 gttgaagtaattccacatattccaagtctaatatcattgaaggatgttgtaaaaggagacaatattga 35779694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 117 - 307
Target Start/End: Original strand, 48362031 - 48362223
Alignment:
Q  117 tttgaagtaattccatatattccaagtctaatct-----cattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaaga 211  Q
    ||||||||||| ||| |||||||||||||||| |     |||||||||||||| |||||||||| ||||| |||||| ||||| ||||||||| ||||||    
T  48362031 tttgaagtaatcccacatattccaagtctaatttaatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaaga 48362130  T
Q  212 atattgtagcttc--taat--ttaatatttcagattgggcaatctaatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataaga 307  Q
    |   |||||||||  ||||  || || |||   ||| ||||||  |||||||||||||||| || |||| || |||||||||| ||||||||||||||||    
T  48362131 a---tgtagcttccataatactttattttt---att-ggcaattgaatctgatggttgatgttctcatacaagtcatagtaatcaattttaatcataaga 48362223  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 794 - 871
Target Start/End: Complemental strand, 35777444 - 35777367
Alignment:
Q  794 tgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgact 871  Q
    |||||||||||||||||||||||||| |||||||||||| ||| ||||  ||| |||  |||||||||||||||||||    
T  35777444 tgtaatattggtgttattttgtatagtcgtgcaaagttttaaactgcagtaagtaaatgaagatcttgaatgatgact 35777367  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 518 - 612
Target Start/End: Complemental strand, 35777605 - 35777511
Alignment:
Q  518 cctaatattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaacagattgtttgagacttg 612  Q
    |||||||||||| | || |||||||||||||||||| ||||||   ||||||||  |||||| |||  ||| ||||| |  ||||||||||||||    
T  35777605 cctaatattgttgtcatgtatataggtgtgcaaagtataaattgtgggaagaaagtgaagttcttttcttggctcaagaatttgtttgagacttg 35777511  T

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Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 5130766 - 5130637
Alignment:
Q  81 aaagattttcgaattcatggctcttcttcagaatcatttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaata 180  Q
    |||| |||||||||||||||  ||| |||| ||    |||||||||||||| ||||| |||||||||| ||| | |||||| |  |||||||||||||||    
T  5130766 aaagtttttcgaattcatgggacttgttcaaaaaagattgaagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaaggagacaata 5130667  T
Q  181 ttgaggtgctgaatatccactcaaagtaag 210  Q
    |||||||||||||||| ||||||| |||||    
T  5130666 ttgaggtgctgaatattcactcaaggtaag 5130637  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 533 - 602
Target Start/End: Complemental strand, 5130120 - 5130051
Alignment:
Q  533 atttatataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaacagattgt 602  Q
    ||||||| |||||||||||||||||||| | ||||||||| |||||| |||| ||||| |||||||||||    
T  5130120 atttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaacagattgt 5130051  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 414 - 487
Target Start/End: Complemental strand, 5130408 - 5130336
Alignment:
Q  414 atcttctcacttaaggttatgatgatttc-tcaatcatttgcttttacaactaatatatttatggtgttgtttat 487  Q
    |||||||||||||||||| ||||  |||| ||||||| ||||||| ||||||||| |||| ||||||||||||||    
T  5130408 atcttctcacttaaggttgtgat--tttcatcaatcaattgctttcacaactaatctattgatggtgttgtttat 5130336  T

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Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 9443031 - 9442939
Alignment:
Q  117 tttgaagtaattccatatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaa 209  Q
    ||||||||||| | | | |||||||||||||| ||||||||||||||  ||||||||| |||||||||||| |||||||||||||||| ||||    
T  9443031 tttgaagtaatccaacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 9442939  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 781 - 868
Target Start/End: Complemental strand, 9442110 - 9442024
Alignment:
Q  781 ttagtctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatg 868  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||| | | ||||| ||| |||||||  ||||||||||||||||    
T  9442110 ttagactttgttatgtaatattggtgttattttatataggtgtgcaaa-tattaaattacatgaagaaaatgaagatcttgaatgatg 9442024  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 253 - 386
Target Start/End: Complemental strand, 9442915 - 9442782
Alignment:
Q  253 aatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgctta 352  Q
    |||||||||||||||||| |  || || ||||||||||| ||| ||||||| |||||||||||||||||| | ||||| | |||  | ||||||  ||||    
T  9442915 aatctgatggttgatgcttctttacaagtcatagtaattgattgtaatcatgagatgagtattcaaagggacttgtgtaagtttcctatgttac-actta 9442817  T
Q  353 ta-tttaaacttcctattttggcattctatttgga 386  Q
    || ||||||||| |||||||| ||||| |||||||    
T  9442816 tattttaaacttactattttgccattccatttgga 9442782  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 521 - 594
Target Start/End: Complemental strand, 9442360 - 9442287
Alignment:
Q  521 aatattgttttaatttatataggtgtgcaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaa 594  Q
    |||||||||||||||| ||||||||||||||||||||||| | || |||||| || ||| ||||  ||||||||    
T  9442360 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaa 9442287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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