View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2100R-Insertion-7 (Length: 121)

Name: NF2100R-Insertion-7
Description: NF2100R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2100R-Insertion-7
NF2100R-Insertion-7
[»] chr1 (1 HSPs)
chr1 (8-104)||(15375492-15375588)
[»] chr6 (2 HSPs)
chr6 (16-90)||(28299600-28299674)
chr6 (16-90)||(28512399-28512473)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 15375492 - 15375588
Alignment:
Q  8 acattttacaatgggaaatgaaatgaggtacctgactttattactgcaccttccgtcacaatttccttcttatttatattcacggcgcctttcgttt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  15375492 acattttacaatgggaaatgaaatgaggtacctgactttattagtgcaccttccgtcacaatttccttctcttttatattcacggcgtctttcgttt 15375588  T

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Target: chr6 (Bit Score: 47; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 28299600 - 28299674
Alignment:
Q  16 caatgggaaatgaaatgaggtacctgactttattactgcaccttccgtcacaatttccttcttatttatattcac 90  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||| |||| || |||||||||    
T  28299600 caatgggaaatgaaatgaggtacctgacttcgttagtgcaccttccttcacaatttcattctcatctatattcac 28299674  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 28512473 - 28512399
Alignment:
Q  16 caatgggaaatgaaatgaggtacctgactttattactgcaccttccgtcacaatttccttcttatttatattcac 90  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||| |||| || |||||||||    
T  28512473 caatgggaaatgaaatgaggtacctgacttcgttagtgcaccttccttcacaatttcattctcatctatattcac 28512399  T

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