View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2100R-Insertion-8 (Length: 355)

Name: NF2100R-Insertion-8
Description: NF2100R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2100R-Insertion-8
NF2100R-Insertion-8
[»] chr3 (10 HSPs)
chr3 (83-344)||(1186163-1186424)
chr3 (83-320)||(1204251-1204488)
chr3 (83-320)||(1304602-1304839)
chr3 (172-281)||(480946-481055)
chr3 (172-281)||(778181-778290)
chr3 (172-281)||(476034-476143)
chr3 (190-274)||(5361030-5361114)
chr3 (221-274)||(45870515-45870568)
chr3 (220-274)||(2996508-2996562)
chr3 (219-267)||(20977366-20977414)
[»] scaffold0438 (1 HSPs)
scaffold0438 (175-311)||(5282-5418)
[»] chr5 (2 HSPs)
chr5 (175-260)||(33958061-33958146)
chr5 (196-285)||(28091058-28091147)
[»] chr2 (4 HSPs)
chr2 (190-274)||(43864051-43864135)
chr2 (175-274)||(43875203-43875302)
chr2 (196-274)||(43867548-43867626)
chr2 (184-281)||(38989109-38989206)
[»] chr4 (1 HSPs)
chr4 (172-269)||(52186834-52186931)
[»] chr7 (3 HSPs)
chr7 (197-274)||(6889148-6889225)
chr7 (196-274)||(32413626-32413704)
chr7 (197-240)||(6844163-6844206)
[»] chr6 (7 HSPs)
chr6 (196-274)||(7115544-7115622)
chr6 (196-274)||(7120616-7120694)
chr6 (196-274)||(7124020-7124098)
chr6 (210-274)||(7140748-7140812)
chr6 (210-274)||(8680362-8680426)
chr6 (196-274)||(7175432-7175510)
chr6 (196-274)||(8656649-8656727)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 83 - 344
Target Start/End: Complemental strand, 1186424 - 1186163
Alignment:
Q  83 agagaatggatatcggttgagtgatcgcgaagagacagcaacatagatatgaaccgttcaaaactttggtcggtactaaatggattaacacttaatgtga 182  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||||  || ||||||||  ||| |||||||||||| |    
T  1186424 agagaatggatatcagttgagtgatcacgaagagacaacaacatagatatgaactgttcaaaactttcttccgtactaaaatgatcaacacttaatgtaa 1186325  T
Q  183 gagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaag 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1186324 gagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaag 1186225  T
Q  283 atggtcgctcaattcactgatcctgtcttcttcaatttcgatgtcgtccctacgctgctgct 344  Q
    || ||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  1186224 attgtcgctcaattcactcatcctgtcttcttcaatttcaatgtcttccctacgctgctgct 1186163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 83 - 320
Target Start/End: Complemental strand, 1204488 - 1204251
Alignment:
Q  83 agagaatggatatcggttgagtgatcgcgaagagacagcaacatagatatgaaccgttcaaaactttggtcggtactaaatggattaacacttaatgtga 182  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||||  || ||||||||  ||| |||||||||||| |    
T  1204488 agagaatggatatcagttgagtgatcacgaagagacaacaacatagatatgaactgttcaaaactttcttccgtactaaaatgatcaacacttaatgtaa 1204389  T
Q  183 gagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaag 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1204388 gagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaag 1204289  T
Q  283 atggtcgctcaattcactgatcctgtcttcttcaattt 320  Q
    || ||||||||||||||| |||||||||||||||||||    
T  1204288 attgtcgctcaattcactcatcctgtcttcttcaattt 1204251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 83 - 320
Target Start/End: Original strand, 1304602 - 1304839
Alignment:
Q  83 agagaatggatatcggttgagtgatcgcgaagagacagcaacatagatatgaaccgttcaaaactttggtcggtactaaatggattaacacttaatgtga 182  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||||  || ||||||||  ||| |||||||||||| |    
T  1304602 agagaatggatatcagttgagtgatcacgaagagacaacaacatagatatgaactgttcaaaactttcttccgtactaaaatgatcaacacttaatgtaa 1304701  T
Q  183 gagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaag 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1304702 gagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgattgagaag 1304801  T
Q  283 atggtcgctcaattcactgatcctgtcttcttcaattt 320  Q
    |||||||||||||||||| |||||||||||||||||||    
T  1304802 atggtcgctcaattcactcatcctgtcttcttcaattt 1304839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 481055 - 480946
Alignment:
Q  172 acttaatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 271  Q
    |||||| || || |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||    
T  481055 acttaaggtaagcgtgggaagagtcttccagagattgatccatcttttggataaaatacaagtttgaacggcctctttggcgtttaaaaaggagagtatg 480956  T
Q  272 tgatggagaa 281  Q
     |||||||||    
T  480955 agatggagaa 480946  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 778181 - 778290
Alignment:
Q  172 acttaatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 271  Q
    ||||||||| |||||||  ||| | |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || ||||||    
T  778181 acttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttggactgcctctttggctttcaaaaaagatagtatg 778280  T
Q  272 tgatggagaa 281  Q
    ||| ||||||    
T  778281 tgaaggagaa 778290  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 476143 - 476034
Alignment:
Q  172 acttaatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 271  Q
    ||||| ||| || |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| || |||||||||||| ||    
T  476143 acttagtgtaagggtgggaagagtattccagagattgatccatcttttggataaaatacaagtttgaacggcttctttggcgtttaaaaaggagagtgtg 476044  T
Q  272 tgatggagaa 281  Q
    ||| ||||||    
T  476043 tgaaggagaa 476034  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 5361030 - 5361114
Alignment:
Q  190 aagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |  || | |||| | || ||||||||||| ||||||    
T  5361030 aagagtcttccagagattggtccatcttttggataaaatgcaagtttggatggcttttttgacgtttaaaaaggagagcatgtga 5361114  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 45870515 - 45870568
Alignment:
Q  221 gataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    ||||||| ||||||||||||||| |||||||||||| |||| || |||||||||    
T  45870515 gataaaacgcaagtttgaactgcgtctttggcattcgaaaacgacagtatgtga 45870568  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 2996508 - 2996562
Alignment:
Q  220 ggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    |||||||||||||||||||||||| ||||| |  |||||||| || |||||||||    
T  2996508 ggataaaatgcaagtttgaactgcatcttttgtgttcaaaaatgaaagtatgtga 2996562  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 20977414 - 20977366
Alignment:
Q  219 tggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagag 267  Q
    |||||||||||||||||||||| || | || |||||| |||||||||||    
T  20977414 tggataaaatgcaagtttgaacggcgttttgggcatttaaaaaggagag 20977366  T

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Target: scaffold0438 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 175 - 311
Target Start/End: Complemental strand, 5418 - 5282
Alignment:
Q  175 taatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | |  ||||||||||| |||||||||    
T  5418 taatgtaagagtgggaagagtcttccagagattgatccatcttttggataaaatgcatgtttgaacggcctctcttgtgttcaaaaaggacagtatgtga 5319  T
Q  275 tggagaagatggtcgctcaattcactgatcctgtctt 311  Q
      |||||||  ||||  |||| |||||||||||||||    
T  5318 atgagaagacagtcggccaatacactgatcctgtctt 5282  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 33958061 - 33958146
Alignment:
Q  175 taatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaa 260  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||  |||||||    
T  33958061 taatgtaagagtgtgaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaacggcctctctggtgttcaaaa 33958146  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 28091147 - 28091058
Alignment:
Q  196 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaagatg 285  Q
    |||||||||||||    |||||||||| | ||||||||||||||| || | |||||||  |||||||||||| || ||| ||| ||||||    
T  28091147 cttccagagattgtcgaatcttttggagagaatgcaagtttgaacggcttgtttggcaaacaaaaaggagagaatttgaaggataagatg 28091058  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 43864051 - 43864135
Alignment:
Q  190 aagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||| |||||||||    
T  43864051 aagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtga 43864135  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 43875203 - 43875302
Alignment:
Q  175 taatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    |||||| ||||||| |||| ||||||| |||||||||||||||||||| |||||||||||||||||  ||||||| ||||| |||||||| | |||||||    
T  43875203 taatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacgacctcttttgcatttaaaaaggacactatgtga 43875302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 43867548 - 43867626
Alignment:
Q  196 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    |||||||||| |||||||||||||||| ||||||||||||||| | |||||||| || ||||||||||| |||| ||||    
T  43867548 cttccagagagtgatccatcttttggacaaaatgcaagtttgagcggcctcttttgcgttcaaaaaggacagtacgtga 43867626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 38989206 - 38989109
Alignment:
Q  184 agtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtgatggagaa 281  Q
    |||||||||| ||||||||||| |||||||||||||||| |||| ||| |||||||| |||| | | || || | |||||| ||||||||| ||||||    
T  38989206 agtggaaagactcttccagagaatgatccatcttttggacaaaacgcatgtttgaacagcctgtattgcgtttagaaaggacagtatgtgaaggagaa 38989109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 52186931 - 52186834
Alignment:
Q  172 acttaatgtgagagtggaaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagta 269  Q
    ||||| ||| ||||||| |||| || |||||||| |||||||||||||||| |||||||| |||||||| |||| ||| || |||| |||||||||||    
T  52186931 acttagtgtaagagtgggaagactcctccagagaatgatccatcttttggacaaaatgcaggtttgaacggcctgttttgcgttcagaaaggagagta 52186834  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 6889225 - 6889148
Alignment:
Q  197 ttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| || ||| |||  | |||||| ||||||||||||    
T  6889225 ttccagagattgttccatcttttggatagaatgcaagtttgaacagcgtctatggtgtccaaaaaagagagtatgtga 6889148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 274
Target Start/End: Complemental strand, 32413704 - 32413626
Alignment:
Q  196 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    ||||||||||||  |||||||| |||| ||||||||||||||||| || | |||||  |||||| ||||||||||||||    
T  32413704 cttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtga 32413626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 6844206 - 6844163
Alignment:
Q  197 ttccagagattgatccatcttttggataaaatgcaagtttgaac 240  Q
    ||||| |||||| ||||||||||||||| |||||||||||||||    
T  6844206 ttccaaagattgttccatcttttggatagaatgcaagtttgaac 6844163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 7115544 - 7115622
Alignment:
Q  196 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    ||||||||||||  ||||||||||||| ||||  |||||||||||||| | |||||  |||||||| ||||||||||||    
T  7115544 cttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtga 7115622  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 7120616 - 7120694
Alignment:
Q  196 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    ||||||||||||  ||||||||||||| ||||  |||||||||||||| | |||||  |||||||| ||||||||||||    
T  7120616 cttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtga 7120694  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 7124020 - 7124098
Alignment:
Q  196 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    ||||||||||||  ||||||||||||| ||||  |||||||||||||| | |||||  |||||||| ||||||||||||    
T  7124020 cttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtga 7124098  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 7140748 - 7140812
Alignment:
Q  210 tccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    ||||||||||||| ||||| |||||||||||||| | ||| | ||||||||| ||||||||||||    
T  7140748 tccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtga 7140812  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 8680362 - 8680426
Alignment:
Q  210 tccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    ||||||||||||| ||||| |||||||||||||| | ||| | ||||||||| ||||||||||||    
T  8680362 tccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtga 8680426  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 7175432 - 7175510
Alignment:
Q  196 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    ||||||||||||  |||||||  ||||||||||||||||||||||||| |  ||||  || || |||||||||||||||    
T  7175432 cttccagagattcttccatctagtggataaaatgcaagtttgaactgcgtgcttggtttttaacaaggagagtatgtga 7175510  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 8656649 - 8656727
Alignment:
Q  196 cttccagagattgatccatcttttggataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 274  Q
    ||||||||||||  ||||||||||||  ||||  |||||||||||||| | |||||  |||||||| ||||||||||||    
T  8656649 cttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtga 8656727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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