View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21010_high_1 (Length: 386)
Name: NF21010_high_1
Description: NF21010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21010_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 41928561 - 41928931
Alignment:
| Q |
19 |
atacctggtagtacttaagcaactgcggtctctttttcttaaatgttggtgtgagaagatcacgttccatgtcaaatggaactggatcaagatgaacagc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41928561 |
atacctggtagtacttaagcaactgcggtctctttttcttaaatgttggtgtgagaagatcacgttccatgtcaaatggaactggatcaagatgaacagc |
41928660 |
T |
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| Q |
119 |
tttaacaaactcaaaacctttcagctacaaaaat----------catgatcagcataaagcttcaggagatttaccttatacatactta---tacttgca |
205 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41928661 |
tttaacaaactcaaaacctttcagctacaaaaatgaacaaaaatcatgatcagcataaagcttcaggagatttaccttatacatacttacgatacttgca |
41928760 |
T |
|
| Q |
206 |
attctgacaatcatgcaaaatgattttgatccatccaactattcaacttaagtaattatattaatattttaaaaaatttaaaacagatatgtgattaagt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41928761 |
attctgacaatcatgcaaaatgattttgatccatccaactattcaactcaagtaattctattaatattttaaaaaatttaaaacagatatgtgattaagt |
41928860 |
T |
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| Q |
306 |
ggttttaaatagaaccttcttttccttcgcaatctttaagagctctccaagtatgtaatgtttcgcctttg |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41928861 |
ggttttaaatagaaccttcttttccttcgcaatctttaagagctctccaagtatgtaatgtttcgcctttg |
41928931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 2206395 - 2206274
Alignment:
| Q |
20 |
tacctggtagtacttaagcaactgcggtctctttttcttaaatgttggtgtgagaagatcacgttccatgtcaaatggaactggatcaagatgaacagct |
119 |
Q |
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|||||| ||||| ||||||||||| || ||||| |||||| ||||||| |||| ||| ||||||||||| |||||||||||||| |||||||| || ||| |
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| T |
2206395 |
tacctgatagtatttaagcaactggggcctcttcttcttatatgttggagtgataaggtcacgttccatatcaaatggaactgggtcaagatggactgct |
2206296 |
T |
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| Q |
120 |
ttaacaaactcaaaacctttca |
141 |
Q |
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|| | |||||||| ||||||| |
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| T |
2206295 |
tttatgaactcaaatcctttca |
2206274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 2219412 - 2219291
Alignment:
| Q |
20 |
tacctggtagtacttaagcaactgcggtctctttttcttaaatgttggtgtgagaagatcacgttccatgtcaaatggaactggatcaagatgaacagct |
119 |
Q |
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|||||| ||||| || |||||||| || ||||| |||||| ||||||| |||| ||| ||||||||||| |||||||||||||| |||||||| || ||| |
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| T |
2219412 |
tacctgatagtatttcagcaactgaggcctcttcttcttatatgttggagtgataaggtcacgttccatatcaaatggaactgggtcaagatggactgct |
2219313 |
T |
|
| Q |
120 |
ttaacaaactcaaaacctttca |
141 |
Q |
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|| | |||||||| ||||||| |
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| T |
2219312 |
tttatgaactcaaatcctttca |
2219291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 2218887 - 2218839
Alignment:
| Q |
315 |
tagaaccttcttttccttcgcaatctttaagagctctccaagtatgtaa |
363 |
Q |
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|||||||||||||||||| |||||||| |||||||| ||||||||||| |
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| T |
2218887 |
tagaaccttcttttcctttccaatctttgagagctcttcaagtatgtaa |
2218839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 2205841 - 2205792
Alignment:
| Q |
314 |
atagaaccttcttttccttcgcaatctttaagagctctccaagtatgtaa |
363 |
Q |
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||||||||||||||||||| |||||||| ||||||| ||||||||||| |
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| T |
2205841 |
atagaaccttcttttcctttccaatctttgagagctcatcaagtatgtaa |
2205792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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