View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21010_low_2 (Length: 364)
Name: NF21010_low_2
Description: NF21010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21010_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 76 - 255
Target Start/End: Original strand, 19762275 - 19762455
Alignment:
| Q |
76 |
atggctactaatataattctcaagaatctttattaagaccatattccatg-agtaaattaggatgtatttgcattcaaacttaaatatacaaattcaaat |
174 |
Q |
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| T |
19762275 |
atggctactaatataattctcaagaatctttattaagaccatattccatttagtaaattaggatggatttgcatccaaacttaaatatacaaattcaaat |
19762374 |
T |
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| Q |
175 |
agtagaattccatatttgaaggactacttgattaaatactaaaacactaggggactttatgaacaaatatatgtctcttca |
255 |
Q |
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| T |
19762375 |
agaagaactccatatttgaaggattgcttgattaaatactgaaacaatgggggactttatgaacaaatatatgtctcttca |
19762455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 76 - 255
Target Start/End: Original strand, 19741781 - 19741961
Alignment:
| Q |
76 |
atggctactaatataattctcaagaatctttattaagaccatattccatg-agtaaattaggatgtatttgcattcaaacttaaatatacaaattcaaat |
174 |
Q |
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| T |
19741781 |
atggctactaatataattctcaagaatttttattaagaccatattccatttagtaaattaggatggatttgcatccaaacttaaatatacaaattcaaat |
19741880 |
T |
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| Q |
175 |
agtagaattccatatttgaaggactacttgattaaatactaaaacactaggggactttatgaacaaatatatgtctcttca |
255 |
Q |
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| T |
19741881 |
agaagaactccatatttgaaggattgcttgattaaatactgaaacaatgggggactttatgaacaaatatatgtctcttca |
19741961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 253 - 364
Target Start/End: Complemental strand, 19969368 - 19969257
Alignment:
| Q |
253 |
tcaaacatgaactgctagatgttaaaaattaaagtataaaccatgcatcttaactgtttcatccatcaaatctgcaatatcatcaaggaactactaaatg |
352 |
Q |
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| T |
19969368 |
tcaaacatgaacttatagatgttagaaacaaaagtataaaccatgcaacttaacagtttcatccattaaatctgcaatatcatcaaggaactactaaatg |
19969269 |
T |
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| Q |
353 |
tgaaatatgtta |
364 |
Q |
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| T |
19969268 |
tgaaatatgtta |
19969257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 253 - 364
Target Start/End: Original strand, 19742342 - 19742453
Alignment:
| Q |
253 |
tcaaacatgaactgctagatgttaaaaattaaagtataaaccatgcatcttaactgtttcatccatcaaatctgcaatatcatcaaggaactactaaatg |
352 |
Q |
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| T |
19742342 |
tcaaacatgaacttatagatgttagaaacaaaagtataaaccatgcaacttaatagtttcatccattaaatctgcaatatcatcaaggaagtactaaatg |
19742441 |
T |
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| Q |
353 |
tgaaatatgtta |
364 |
Q |
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| T |
19742442 |
tgaaatatgtta |
19742453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 20018947 - 20019063
Alignment:
| Q |
17 |
agtttgaaggataatactgcaagtgttgtcaacattcttgctagaagatgagtgtccct------------atggctactaatataattctcaagaatct |
104 |
Q |
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| T |
20018947 |
agtttgaaggatattactgcaagtgttgtgaacattcttgctagaagatgagtgtccctagctctattctaatggctactaatataattctcaagaatct |
20019046 |
T |
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| Q |
105 |
ttattaagaccatattc |
121 |
Q |
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| T |
20019047 |
ttattaagaccatattc |
20019063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 14855343 - 14855380
Alignment:
| Q |
327 |
caatatcatcaaggaactactaaatgtgaaatatgtta |
364 |
Q |
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| T |
14855343 |
caatatcatcaagaaattactaaatgtgaaatatgtta |
14855380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 38718599 - 38718518
Alignment:
| Q |
283 |
aaagtataaaccatgcatcttaactgtttcatccatcaaatctgcaatatcatcaaggaactactaaatgtgaaatatgtta |
364 |
Q |
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|||||| |||||||||||||||| ||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||| |
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| T |
38718599 |
aaagtaaaaaccatgcatcttaatagtttcatcccctaaatcatcaatatcatcaaggaattactaaatgtgtaatatgtta |
38718518 |
T |
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