View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21011_low_1 (Length: 898)
Name: NF21011_low_1
Description: NF21011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21011_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 852; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 852; E-Value: 0
Query Start/End: Original strand, 1 - 876
Target Start/End: Complemental strand, 39082825 - 39081950
Alignment:
| Q |
1 |
tggagctagaaatctattgccttgactgaaaatagttggggacgaacttccaccgattgcatattgttgccaatgtgtataatcattgttgaccacgtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39082825 |
tggagctagaaatctattgccttgactaaaaatagttggggacgaacttccaccaattgcatattgttgccaatgtgtataatcattgttgaccacatga |
39082726 |
T |
|
| Q |
101 |
aagtatccgaacctgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcgaaataaagagtaaaaatatataacaaatggca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39082725 |
aagtatccgaacctgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcaaaataaagagtaaaaatatataacaaatggca |
39082626 |
T |
|
| Q |
201 |
agtagggcttaattattgtggcagagaaaaattaactaatttacgaaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082625 |
agtagggcttaattattgtggcagagaaaaattaactaatttacaaaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtag |
39082526 |
T |
|
| Q |
301 |
cttgcatatttttgtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082525 |
cttgcatatttttgtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttga |
39082426 |
T |
|
| Q |
401 |
tccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcccatcaccatcc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082425 |
tccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcccatcaccatcc |
39082326 |
T |
|
| Q |
501 |
gatctttctttcctaacacgatggttaggagagtcactcacataaccactaccacctcgtacacaatgatgaatgtgtataccatgaattatgatgttgg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082325 |
gatctttctttcctaacacgatggttaggagagtcactcacataaccactaccacctcgtacacaatgatgaatgtgtataccatgaattatgatgttgg |
39082226 |
T |
|
| Q |
601 |
tcttttcttgtattctaatacatggtccttcagcaatgtgtacatttacacctctaccatcaattgttttgaaagagttcatgagaagatccatctttag |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
39082225 |
tcttttcttgtattctaatacatggtccttcagcaatgtgtacatttacacctctaccatcaattgttttgaaagaattcatgagaagatccatctttag |
39082126 |
T |
|
| Q |
701 |
tttgatcaccatgtcatgcttgaaaatgatccataaaggctcttgttggataacagcatgtcttaatgttcctggcttaggattcacagggtcatcactt |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082125 |
tttgatcaccatgtcatgcttgaaaatgatccataaaggctcttgttggataacagcatgtcttaatgttcctggcttaggattcacagggtcatcactt |
39082026 |
T |
|
| Q |
801 |
gagtcaatgaccatgtaatattttccatctttacctccaattgcacgtctaccgaacccaatagcacattctgcta |
876 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39082025 |
gagtcaatgaccatgtaatattttccatctttacctccaattgcacgtctaccgaacccaatagcacattctgcta |
39081950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 31727448 - 31726939
Alignment:
| Q |
1 |
tggagctagaaatctattgccttgactgaaaatagttggggacgaacttccaccgattgcatattgttgccaatgtgtataatcattgttgaccacgtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |
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|
| T |
31727448 |
tggagctagaaatctattgccttgactaaaaatagttcgggacgaacttccaccgattgcatattgttgccaatgtgtgtaatcattgttcaccacatga |
31727349 |
T |
|
| Q |
101 |
aagtatccgaacctgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcgaaataaagagtaaaaatatataacaaatggca |
200 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
31727348 |
aagtatccgaacctgcatctgcaacattcgtgtagaaaaaatttcaaactgttaggaataa--------------gagtaaaaatatataacaaatggca |
31727263 |
T |
|
| Q |
201 |
agtagggcttaattattgtggcagagaaaaattaactaatttacgaaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtag |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31727262 |
agtagggcttaattactgtggcagagaaaaattaactaataaacctaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtag |
31727163 |
T |
|
| Q |
301 |
cttgcatatttttgtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttga |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31727162 |
cttgcatatttttgtcctcttcataggaatcactatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttga |
31727063 |
T |
|
| Q |
401 |
tccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcccatcaccatcc |
500 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
31727062 |
tccatgaacaacatcaatgaaaccatcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatagattgtgatcccatcaccatcc |
31726963 |
T |
|
| Q |
501 |
gatctttctttcctaacacgatgg |
524 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
31726962 |
gatctttctttcctaacacgatgg |
31726939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 616 - 789
Target Start/End: Complemental strand, 39075761 - 39075588
Alignment:
| Q |
616 |
taatacatggtccttcagcaatgtgtacatttacacctctaccatcaattgttttgaaagagttcatgagaagatccatctttagtttgatcaccatgtc |
715 |
Q |
| |
|
||||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||| ||||| | || || || || || || |||||||| |
|
|
| T |
39075761 |
taatacaaggtccaccagcaatgtgcacatttgttcctctaccatcaattgttttgaaagaattcatcattagctcttgtttaagcttaataaccatgtc |
39075662 |
T |
|
| Q |
716 |
atgcttgaaaatgatccataaaggctcttgttggataacagcatgtcttaatgttcctggcttaggattcacag |
789 |
Q |
| |
|
| ||||||| || ||||| || || |||| ||| |||||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
39075661 |
acgcttgaagattatccacaatggttcttcttgaataacaccatatcttaatgttcctggctttggattcacag |
39075588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 329 - 418
Target Start/End: Complemental strand, 39076048 - 39075959
Alignment:
| Q |
329 |
atcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaat |
418 |
Q |
| |
|
|||||||||||| || |||||||| || |||||| | ||||| |||||||||||||||||| ||| || |||||||||| ||||||||| |
|
|
| T |
39076048 |
atcactatgacccaaaagcataaccttattatgatgagtcatgaaattattagaaatagtaatagctgtagatccatgaataacatcaat |
39075959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 651 - 682
Target Start/End: Original strand, 34288693 - 34288724
Alignment:
| Q |
651 |
cctctaccatcaattgttttgaaagagttcat |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34288693 |
cctctaccatcaattgttttgaaagagttcat |
34288724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 247 - 466
Target Start/End: Original strand, 7593253 - 7593472
Alignment:
| Q |
247 |
accttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagag |
346 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| |||||||| |||||| ||||||| | ||||| | ||| ||||||||||| || || || |
|
|
| T |
7593253 |
accttggcattctttggacaagcccttcaccaaaatgattaaaagcaatagtaacttgcatgtccttgtcttgtgtataagaatcactatgtcccaaaag |
7593352 |
T |
|
| Q |
347 |
cataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaa |
446 |
Q |
| |
|
||||||||||| |||| | |||||||| ||||| |||||||||| ||| | |||||||| | ||||||||| | ||| ||| |||||| ||||| ||| |
|
|
| T |
7593353 |
cataactttgtcatgatgagtcatatagttatttgaaatagtaatagcattagatccatgtataacatcaataagaccatcacgacaattagacaaagaa |
7593452 |
T |
|
| Q |
447 |
caatgatccacccaaatatg |
466 |
Q |
| |
|
|||||||| | ||||||||| |
|
|
| T |
7593453 |
caatgatcaatccaaatatg |
7593472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 247 - 467
Target Start/End: Complemental strand, 43131564 - 43131344
Alignment:
| Q |
247 |
accttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagag |
346 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||| || |||||||| |||||| ||||||| || ||||| ||| | |||||||||||| || || |
|
|
| T |
43131564 |
accttggcattctttgaacaaggccttcaccaaagtgattaaaagcaatagtaacttgcatgttcttgtcttgagtataagtatcactatgacccaaaag |
43131465 |
T |
|
| Q |
347 |
cataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaa |
446 |
Q |
| |
|
||||||||| | ||| | ||||||||||| ||||| || |||| || || || ||||||| | ||||||||||||| ||| ||| || ||||| ||| |
|
|
| T |
43131464 |
cataactttatcatggtgagtcatataattgttagagatggtaattgcagtggacccatgaatagcatcaatcaaaccatcattacagttagacaaagaa |
43131365 |
T |
|
| Q |
447 |
caatgatccacccaaatatga |
467 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
43131364 |
caatgatccacccaaacatga |
43131344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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