View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21011_low_3 (Length: 258)
Name: NF21011_low_3
Description: NF21011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21011_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 45218297 - 45218399
Alignment:
| Q |
19 |
accaccaaaagagtacaatatcacataacattggtttgtagataaaacaatatcacactaaaattactcattcatcaatatgaaacacccaaaaaattca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45218297 |
accaccaaaagagtacaatatcacataacattggtttgtagataaaacaatatcacactaaaattactcattcatcaatatgaaacacccaaaaaatcca |
45218396 |
T |
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| Q |
119 |
cat |
121 |
Q |
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||| |
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| T |
45218397 |
cat |
45218399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 45218463 - 45218521
Alignment:
| Q |
185 |
agctcagcacactacaaacattgttgtacgtttggggtgtggtaagagccattggagat |
243 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45218463 |
agctcagcacactacaaacattgttgtacctttggggtgtggtaagagccattggagat |
45218521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 3568689 - 3568621
Alignment:
| Q |
46 |
acattggtttgtagataaaacaatatcacactaaaattactcattcatcaatatgaaacacccaaaaaat |
115 |
Q |
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| T |
3568689 |
acattggtttgtagataaaaccatag-acactaaaattactcattcatcaatatgaaacaaccaaaaaat |
3568621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 3578967 - 3578873
Alignment:
| Q |
19 |
accaccaaaagagtacaatatcacataacattggtttgtagataaaacaatatcacactaaaattactcattcatcaatatgaaacacccaaaaa |
113 |
Q |
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| T |
3578967 |
accaccaaaagagtacaatatcacataacattggtttgtagataaaacaatatcacactaaaattactcattcatcaatatgaaacacccaaaaa |
3578873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 3578802 - 3578744
Alignment:
| Q |
185 |
agctcagcacactacaaacattgttgtacgtttggggtgtggtaagagccattggagat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3578802 |
agctcagcacactacaaacattgttgtacctttggggtgtggtaagagccattggagat |
3578744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 3565211 - 3565109
Alignment:
| Q |
19 |
accaccaaaagagtacaatatcacataacattggtttgtagataaaacaatatcacactaaaattactcattcatcaatatgaaacacccaaaaaattca |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
3565211 |
accaccaaaagagtacaatatcacataacattggtttgtagataaaacaatatcacactaaaattactcattcatcaatatgaaacttccaaaaaatcca |
3565112 |
T |
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| Q |
119 |
cat |
121 |
Q |
| |
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||| |
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|
| T |
3565111 |
cat |
3565109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 3565035 - 3564977
Alignment:
| Q |
185 |
agctcagcacactacaaacattgttgtacgtttggggtgtggtaagagccattggagat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3565035 |
agctcagcacactacaaacattgttgtacgtttggggtgtggtaagagccattggagat |
3564977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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