View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21012_low_1 (Length: 311)

Name: NF21012_low_1
Description: NF21012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21012_low_1
NF21012_low_1
[»] chr6 (18 HSPs)
chr6 (1-283)||(13943066-13943348)
chr6 (1-284)||(14027163-14027446)
chr6 (2-251)||(14017176-14017425)
chr6 (2-287)||(14112572-14112857)
chr6 (1-295)||(13470607-13470901)
chr6 (1-282)||(13860714-13860995)
chr6 (1-275)||(14086687-14086964)
chr6 (4-295)||(13890691-13890979)
chr6 (22-287)||(13872831-13873096)
chr6 (144-287)||(14049096-14049239)
chr6 (1-39)||(13471007-13471045)
chr6 (1-39)||(14017103-14017141)
chr6 (1-39)||(14027091-14027129)
chr6 (3-39)||(13873295-13873331)
chr6 (3-39)||(13891016-13891052)
chr6 (3-39)||(14027021-14027057)
chr6 (1-31)||(13873159-13873189)
chr6 (1-39)||(14112499-14112537)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 13943066 - 13943348
Alignment:
Q  1 ctgagatcaagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  13943066 ctgagatcaagaaattgcaagttggagagatctccaagtcgatgaggaatcaaaccatctagaagattgtaggaaagattcaagtatttcaaatgtgaaa 13943165  T
Q  101 gagactccaattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaatt 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13943166 gagactccaattgaataggaatttgtcctcgaaaataacaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaatt 13943265  T
Q  201 gccttgaaaattatttctactgaggttcaaatattgtaattgttgcaactccatcagtgacttgtggatatcaccgctgatat 283  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13943266 gccttcaaaattatttctactgaagttcaaatattgtaactgttgcaactccatcagtgacttgtggatatcaccgctgatat 13943348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 14027163 - 14027446
Alignment:
Q  1 ctgagatcaagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaa 100  Q
    |||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  14027163 ctgagatcaagaaattgcaagttggagagacctccaagttgatgaggaatcaaaccatctagaagattgttggaaagattcaagtatttcaaatgtgaaa 14027262  T
Q  101 gagactccaattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaatt 200  Q
    |||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14027263 gagactccaattgaataggaatttgtcctccaaaatgacaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctagtatagaatt 14027362  T
Q  201 gccttgaaaattatttctactgaggttcaaatattgtaattgttgcaactccatcagtgacttgtggatatcaccgctgatata 284  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  14027363 gccttcaaaattatttctactgaggttcaaatattgtaattgttgcaactccatcaatgacttgtggatatcaccactgatata 14027446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 14017176 - 14017425
Alignment:
Q  2 tgagatcaagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaag 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14017176 tgagatcaagaaattgcaagttggagagatctccaagtcgatgaggaatcacaccatctagatgattgttggaaagatccaagtatttcaaatgtgaaag 14017275  T
Q  102 agactccaattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattg 201  Q
    ||||||||||||||||||||||||||||| || ||   ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14017276 agactccaattgaataggaatttgtcctccaagattgcaaattgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattg 14017375  T
Q  202 ccttgaaaattatttctactgaggttcaaatattgtaattgttgcaactc 251  Q
    |||| ||||||| ||||||||| |||||||||||||||||||||||||||    
T  14017376 ccttcaaaattaattctactgaagttcaaatattgtaattgttgcaactc 14017425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 287
Target Start/End: Original strand, 14112572 - 14112857
Alignment:
Q  2 tgagatcaagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaag 101  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||    
T  14112572 tgagatcaagaaattgcaagttggagagatctccaagtcgattaggaatcacaccatctagacgattgttggaaagatttatgtatttcaaatgtgaaag 14112671  T
Q  102 agactccaattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattg 201  Q
    |||| ||||| ||||||||||| |||| | ||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||| ||| |||   |||    
T  14112672 agaccccaatggaataggaattcgtccgccaaaataacaatttgaaagatcaaggtttcttaggtttcttagagatccaaagaaacttgggatatctttg 14112771  T
Q  202 ccttgaaaattatttctactgaggttcaaatattgtaattgttgcaactccatcagtgacttgtggatatcaccgctgatataaaa 287  Q
    |||| ||||||||||| ||||||||||||||| | |||||| |||||||| ||||||||||||||||||||||| |||||||||||    
T  14112772 ccttcaaaattatttccactgaggttcaaatactttaattgctgcaactctatcagtgacttgtggatatcaccactgatataaaa 14112857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 13470901 - 13470607
Alignment:
Q  1 ctgagatcaagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | ||||| ||||||||||||||||||||||| ||||    
T  13470901 ctgagatcaagaaattgcaagttggagagatctccaagtcgatgaggaataacaccatctagacggttgtttgaaagattcaagtatttcaaatgagaaa 13470802  T
Q  101 gagactccaattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaatt 200  Q
    ||||||| |||||||||||||||||||||| || ||   ||  ||||||||||||||||||||||||||||| ||||||||||| || | | ||| ||||    
T  13470801 gagactcgaattgaataggaatttgtcctccaagattgcaacctgaaagatcaaggtatcttaggtttcttagagatccaaagatacttaggatataatt 13470702  T
Q  201 gccttgaaaattatttctactgaggttcaaatattgtaattgttgcaactccatcagtgacttgtggatatcaccgctgatataaaacttattgc 295  Q
    ||||| ||||||||||| ||  ||||||||||| | |||||| ||||||||||||| |||||||||||||||||| || |||||||| |||||||    
T  13470701 gccttcaaaattatttccaccaaggttcaaatactttaattgctgcaactccatcaatgacttgtggatatcaccactcatataaaatttattgc 13470607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 13860995 - 13860714
Alignment:
Q  1 ctgagatcaagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||    ||||||||||||||||||||||| ||||    
T  13860995 ctgagatcaagaaattgcaagttggagagatctccaagttgatgaggaatcaaaccatctagatgattccacgaaagattcaagtatttcaaatgcgaaa 13860896  T
Q  101 gagactccaattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaatt 200  Q
    ||||||| ||||||||| |||||||||||| ||||| | |||  ||||||||||||||||||||||||||||||||||||||||||||||||| |  | |    
T  13860895 gagactcaaattgaatatgaatttgtcctccaaaatgacaattagaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtagaatact 13860796  T
Q  201 gccttgaaaattatttctactgaggttcaaatattgtaattgttgcaactccatcagtgacttgtggatatcaccgctgata 282  Q
       |  |||||||||||  |||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||    
T  13860795 ctttctaaaattatttccgctgaggttcaaatattgtaattgttgcaactccaccaatgacttgtggatatcacccctgata 13860714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 14086687 - 14086964
Alignment:
Q  1 ctgagatcaagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| |||    |||||||||||||||||||||||  |||    
T  14086687 ctgagatcaagaaattgcaagttggagagatctccaagttgatgaggaatcaaaccatctagataattccatgaaagattcaagtatttcaaatgcaaaa 14086786  T
Q  101 gagactccaattgaataggaatttg---tcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtataga 197  Q
    |||||||||||||||||||||||||   ||||  |||||   ||||||||||||||||||||||||||||||| | |||||||||||||| ||| |||      
T  14086787 gagactccaattgaataggaatttgatctccttcaaaattgcaatatgaaagatcaaggtatcttaggtttctcagagatccaaagaaacttgggatatg 14086886  T
Q  198 attgccttgaaaattatttctactgaggttcaaatattgtaattgttgcaactccatcagtgacttgtggatatcacc 275  Q
    |||||||||||||| ||||||||| |||||||| || | ||||| |||||||||||||||||| ||||||||||||||    
T  14086887 attgccttgaaaatcatttctacttaggttcaagtactttaatttttgcaactccatcagtgagttgtggatatcacc 14086964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 13890979 - 13890691
Alignment:
Q  4 agatcaagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagag 103  Q
    |||||||||||||||||||||||||||| |||||||   |||||||||| |||||| |||| ||||  |||||  |||||||||||||||||  |||| |    
T  13890979 agatcaagaaattgcaagttggagagatttccaagt---tgaggaatcaaaccatccagatcattgccggaaattttcaagtatttcaaatggtaaagtg 13890883  T
Q  104 actccaattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgcc 203  Q
    |||| |||||||||||||||||||||| ||||    |||| ||||||||||||||||||||||||||||||||||||||||||||||| | |  | | ||    
T  13890882 actcaaattgaataggaatttgtcctccaaaaccgcaataagaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctgggacatgactccc 13890783  T
Q  204 ttgaaaattatttctactgaggttcaaatattgtaattgttgcaactccatcagtgacttgtggatatcaccgctgatataaaacttattgc 295  Q
    |  ||||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||  |||||||||| |||||||    
T  13890782 tctaaaattatttctgttgaggttcaaatattgtaactgttgcaactccatcaatgacttgtggatatcacccatgatataaaatttattgc 13890691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 22 - 287
Target Start/End: Complemental strand, 13873096 - 13872831
Alignment:
Q  22 ttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactccaattgaataggaa 121  Q
    |||||||||| ||||||| | |||||||||| |||||| |||| |||   ||||||| |||| ||||||||||| | ||||||||| |||||||| | ||    
T  13873096 ttggagagatttccaagttgatgaggaatcaaaccatcgagatcattcgaggaaagactcaaatatttcaaatgcggaagagactcaaattgaattgaaa 13872997  T
Q  122 tttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgccttgaaaattatttctact 221  Q
    ||| ||| | |||   | ||  |||||| ||||||||||||| |||||||| ||| ||||| ||||||    ||  | |||||| ||||| ||| | |||    
T  13872996 tttttccaccaaagcgacaacgtgaaaggtcaaggtatcttatgtttcttagagaaccaaaaaaacctaaactattactgcctttaaaataattcccact 13872897  T
Q  222 gaggttcaaatattgtaattgttgcaactccatcagtgacttgtggatatcaccgctgatataaaa 287  Q
    || ||||||||| | |||||| | ||||||||||| |||||||| || |||||| | |||||||||    
T  13872896 gaagttcaaatactttaattgcttcaactccatcactgacttgtcgacatcacctccgatataaaa 13872831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 287
Target Start/End: Original strand, 14049096 - 14049239
Alignment:
Q  144 tgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgccttgaaaattatttctactgaggttcaaatattgtaattgt 243  Q
    |||||||||| | || |||| |||||||| |||||||| ||||||||| |||||| |  ||   |||| ||| | || |||||||||||| | || |||     
T  14049096 tgaaagatcatgataccttaagtttcttagagatccaatgaaacctgggatagaaatatctgtgaaataattcccacggaggttcaaatactttagttgc 14049195  T
Q  244 tgcaactccatcagtgacttgtggatatcaccgctgatataaaa 287  Q
    ||||||||||||| ||| |||||||||||||| | |||||||||    
T  14049196 tgcaactccatcaatgagttgtggatatcaccacggatataaaa 14049239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13471045 - 13471007
Alignment:
Q  1 ctgagatcaagaaattgcaagttggagagatctccaagt 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  13471045 ctgagatcaagaaattgcaagttggagagatttccaagt 13471007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14017103 - 14017141
Alignment:
Q  1 ctgagatcaagaaattgcaagttggagagatctccaagt 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  14017103 ctgagatcaagaaattgcaagttggagagatttccaagt 14017141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14027091 - 14027129
Alignment:
Q  1 ctgagatcaagaaattgcaagttggagagatctccaagt 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  14027091 ctgagatcaagaaattgcaagttggagagatttccaagt 14027129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 13873331 - 13873295
Alignment:
Q  3 gagatcaagaaattgcaagttggagagatctccaagt 39  Q
    ||||||||||||||||||||||||||||| |||||||    
T  13873331 gagatcaagaaattgcaagttggagagatttccaagt 13873295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 13891052 - 13891016
Alignment:
Q  3 gagatcaagaaattgcaagttggagagatctccaagt 39  Q
    ||||||||||||||||||||||||||||| |||||||    
T  13891052 gagatcaagaaattgcaagttggagagatttccaagt 13891016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 14027021 - 14027057
Alignment:
Q  3 gagatcaagaaattgcaagttggagagatctccaagt 39  Q
    ||||||||||||||||||||||||||||| |||||||    
T  14027021 gagatcaagaaattgcaagttggagagatttccaagt 14027057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 13873189 - 13873159
Alignment:
Q  1 ctgagatcaagaaattgcaagttggagagat 31  Q
    |||||||||||||||||||||||||||||||    
T  13873189 ctgagatcaagaaattgcaagttggagagat 13873159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14112499 - 14112537
Alignment:
Q  1 ctgagatcaagaaattgcaagttggagagatctccaagt 39  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  14112499 ctgagatcaagaaattgcaagttggaaagatttccaagt 14112537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University