View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21013_high_2 (Length: 360)
Name: NF21013_high_2
Description: NF21013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21013_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 21 - 351
Target Start/End: Complemental strand, 28988356 - 28988029
Alignment:
| Q |
21 |
acatcatcagccacaaaataacagggctcaaaatcagaacccggaagcatcattaacataatcaatgtacacaacctcagagaaaagaaagaagaaaagg |
120 |
Q |
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| T |
28988356 |
acatcatcagccacaaaataacagggctcaaaatcagaacccagaagcatcattaacataatc---gtacacaacctcagagaaaagaaagaagaaaagg |
28988260 |
T |
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| Q |
121 |
tatttttcccccaccacactacaattatttaaagctccaaaattctaacttagactttactagctacgaagcagacaccgacacgacactgacacggata |
220 |
Q |
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| T |
28988259 |
tatttttcccccaccacactacaattatttaaagctccaaaattctaacttatactttactagctacgaagcagacaccgacacgacactgacacggata |
28988160 |
T |
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| Q |
221 |
cgtcgacacaggtgatttatgtgtaggtgttgtgtcagtgtcagacaccggtgcgttttggatacaggaaacacctaatctaagaggtgtccgtgcttca |
320 |
Q |
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| T |
28988159 |
cgtcgacacaggtgatttatgtgtaggtgttgtgtcagtgtcagacaccggtgcgttttggacacaggaaacacctaatctaagaggtgtccgtgcttca |
28988060 |
T |
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| Q |
321 |
gaacttactagtaacaactcactacctatga |
351 |
Q |
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| T |
28988059 |
gaacttactagtaacaactcactacctatga |
28988029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 44572683 - 44572654
Alignment:
| Q |
200 |
gacacgacactgacacggatacgtcgacac |
229 |
Q |
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| T |
44572683 |
gacacgacactgacacggatacgtcgacac |
44572654 |
T |
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