View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21013_high_4 (Length: 342)
Name: NF21013_high_4
Description: NF21013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21013_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 32224618 - 32224928
Alignment:
| Q |
11 |
cacagacaacagtgggaaatgctgcagctggtgtccagacaactgtgggaaatgctgcagctaatgttcagaagaccgtaggagaatatgctaccaaggc |
110 |
Q |
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| T |
32224618 |
cacagacaactgtgggaaatgctgcagctggtgtccagacaactgtgggaaatgctgcagctaatgttcagaagaccgtaggagaatatgctaccaaggc |
32224717 |
T |
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| Q |
111 |
tgctgattttgtgcagtccaaaccagaagagccagccaaacctgaaggtgtgattgctggtgctaaaaatgctattggaggcttatttaagaaatgaaac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32224718 |
tgctgattttgtgcagtccaaaccagaagagccagccaaacctgaaggtgtgattgctggtgctaaaaatgctgttggaggcttatttaagaaatgaaac |
32224817 |
T |
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| Q |
211 |
atcactgatttcactttagcatcttgtg--------attaattaattaataaggatactaaacttgtcatccattcaagtatgtgtataagttagcactg |
302 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32224818 |
atcactgatttcactttagcatcctgtgattaattaattaattaattaataaggatactaaacttgtcatcccttcaagtatgtgtataagttagcactg |
32224917 |
T |
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| Q |
303 |
tgtatcttatc |
313 |
Q |
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||||||||||| |
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| T |
32224918 |
tgtatcttatc |
32224928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 32229477 - 32229580
Alignment:
| Q |
11 |
cacagacaacagtgggaaatgctgcagctggtgtccagacaactgtgggaaatgctgcagctaatgttcagaagaccgtaggagaatatgctaccaaggc |
110 |
Q |
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|||||| ||| || ||||||||||| |||||| ||||| |||| ||||||||||||||||| ||||| ||||| |||||||| |||||||||| ||| |
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| T |
32229477 |
cacagaaaactgtaggaaatgctgcttctggtgcccagaaaactttgggaaatgctgcagctggagttcataagactgtaggagattatgctaccacggc |
32229576 |
T |
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| Q |
111 |
tgct |
114 |
Q |
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|||| |
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| T |
32229577 |
tgct |
32229580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 32229703 - 32229777
Alignment:
| Q |
243 |
attaattaataaggatactaaacttgtcatccattcaa---gtat-gtgtataagttagcactgtgtatcttatc |
313 |
Q |
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||||||||||||||| |||||||||| ||||| || | |||| ||||||||||||||||||||||||||||| |
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| T |
32229703 |
attaattaataaggacactaaacttgccatcccttttaagagtattgtgtataagttagcactgtgtatcttatc |
32229777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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