View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_high_11 (Length: 523)
Name: NF21014_high_11
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 4e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 43 - 258
Target Start/End: Original strand, 6097751 - 6097967
Alignment:
| Q |
43 |
ggtgtggtgtacactgtgtgtaggcattggtattgcgtcagtgttttatagcttttcattatttgggacaagagtattattgtactgataaggtcccttc |
142 |
Q |
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| T |
6097751 |
ggtgtggtgtacattgtgtgtaggcattggtattgcgtcagtgtttcatagcttttcattatttgggacaagagtattattgtactgataaggtc--ttc |
6097848 |
T |
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| Q |
143 |
ccattgataagaacacaatctggta---ttccaaggcttttccaccatcaagtgttgatcttagagcctatatttatcaaacaaacatacaaaatagcaa |
239 |
Q |
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| T |
6097849 |
ccattgataagaacacaatctggtactattccaaggcttttccaccatcaaatgttgatcttagagcctatatttatcaaacaaacatacaaaatagcaa |
6097948 |
T |
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| Q |
240 |
ttaaatatcaataaaaaca |
258 |
Q |
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| T |
6097949 |
ttaaatatcaataaaaaca |
6097967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 110 - 370
Target Start/End: Complemental strand, 1592979 - 1592709
Alignment:
| Q |
110 |
acaagagtattattgtactgataaggtcccttcccattgataagaacacaatctggtattccaagg-cttttccaccatcaagtgttgatcttagagcct |
208 |
Q |
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| T |
1592979 |
acaagagtattattgtactgataaggtcccttcccattgataagaacaccatctggtattccaaggtcttttccaccgtcaagtgttgatcttagagcct |
1592880 |
T |
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| Q |
209 |
atatttatcaaacaaacatacaaaatagcaattaaatatcaataaaaa--cacaacattttcaaaatttatagaagaaagttaaatgaaaggcaataact |
306 |
Q |
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| T |
1592879 |
atatttatcaaaaaaacatacaaaatagcaatcaaatatcaataaaaactcacaacatcttcagaatttacagaagaaagtctaatgaaaggtgataact |
1592780 |
T |
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| Q |
307 |
aaacgtgtagtcctgatt-----aat--ccaatcataatgaaaattttgccgtcgggctgcgcgaaaggaa |
370 |
Q |
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| T |
1592779 |
aaccgtgtagtcctgagtataccaatcaccaatcataatgaaaatttcaccgtcgggctgcgcgaaaggaa |
1592709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 1593188 - 1593132
Alignment:
| Q |
21 |
accagtgtaaaaattgaaagtgggtgtggtgtacactgtgtgtaggcattggtattg |
77 |
Q |
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| T |
1593188 |
accagtggaaaaattgaaagtgggtgtggtttacattgtgtgtaggcattggtattg |
1593132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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