View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_high_12 (Length: 468)
Name: NF21014_high_12
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 41024454 - 41024157
Alignment:
| Q |
11 |
cacagacattaattcttcaaaattacgactttatcctttgtcaaatttcctatagagagagacccaaaaacaacaaaaaagcgaaacaccgttgtatgaa |
110 |
Q |
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| T |
41024454 |
cacaaacattaattcttcaaaattacgactttatcctttgtcaaatttcctatagagagagacccaaaaacaacaaaaaagcgaaacaccgttgtatgaa |
41024355 |
T |
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| Q |
111 |
ctgtcaaatgctggcgacccatttgtaacgcggtggctctgccacaaaccacctttcaaaaaatgggttccggtcagattagcggcggcgttggcggtgg |
210 |
Q |
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| T |
41024354 |
ctgtcaaatgctggcgacccatttgtaacgcggtggctctgccacaaaccacctttcaaaaaatgggttccggtcagattagcggcggcgttggcggtgg |
41024255 |
T |
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| Q |
211 |
ttctcatactaacaacggcggtggtagtaacagttgttgtgatatgagtatgaagtgttggtgtaggtggagattagaaaatcaacactactataacc |
308 |
Q |
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| T |
41024254 |
ttctcatactaacaacggcggtggtagtaacagttgttgtgatatgagtatgaagtgttggtgtaggtggagattagaaaatcaacactactataacc |
41024157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 396 - 451
Target Start/End: Complemental strand, 41024069 - 41024014
Alignment:
| Q |
396 |
ctccttctgttcatgaatctctttccccttttggttgtcatgatgacaatgagggt |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41024069 |
ctccttctgttcatgaatctctttccccttttggttgtcatgatgacaatgagggt |
41024014 |
T |
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