View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21014_high_15 (Length: 426)
Name: NF21014_high_15
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 30994990 - 30994584
Alignment:
| Q |
18 |
gcattgtgaggtggtttcaaagatttggctcaaggtgttgtgtttattagaaatgaatttcgtcaatcctcctaaaactatttgtgcatttagattgttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30994990 |
gcattgtgaggtggtttcaaagatttggctcaaggtgttgtgtttattagaaatgaatttcgtcaatcctcctaaaactatttgtgcatttagattgttg |
30994891 |
T |
|
| Q |
118 |
aacaaattatgcgggaaagaagaagcttaggcgtggtttgtggataatttgacatgccgtaatttggttgatttgaaaggagagaaatggtagaatcttt |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30994890 |
aacaaatgatgcgggaaagaagaagcttaggcgtggtttgtggataatttgacatgccgtaatttggttgatttgaaaggagagaaatggtagaatcttt |
30994791 |
T |
|
| Q |
218 |
aaaaattatgttaaggaggtggatgagattctggagaatataaatgtttatcttggcattggagtttaagtaggttgaacattgtgcagcatctttgtat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30994790 |
aaaaattatgttaaggaggtggatgagattctggagaatataaatgtttatcttggcattggagtttaagtaggttgaacattgtgcaacatctttgtat |
30994691 |
T |
|
| Q |
318 |
tatgagtggtattgaaatcctaagaagtgtttaggtaggtagtttggaggcagtttaattttttgttgcctttgcatgttgtttggtgtttcgtttgggt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30994690 |
tatgagtggtattgaaatcctaagaagtgtttaggcaggtagtttggaggcggtttaattttttgttgcctttgcatgttgtttggtgtttcgtttgggt |
30994591 |
T |
|
| Q |
418 |
ttcatct |
424 |
Q |
| |
|
||||||| |
|
|
| T |
30994590 |
ttcatct |
30994584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 11678297 - 11678341
Alignment:
| Q |
162 |
taatttgacatgccgtaatttggttgatttgaaaggagagaaatg |
206 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| |||| |||||||| |
|
|
| T |
11678297 |
taatttggcatgccgtaatttgggtgatttggaaggtgagaaatg |
11678341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University