View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_high_17 (Length: 382)
Name: NF21014_high_17
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 42683563 - 42683917
Alignment:
| Q |
17 |
agtgcaatgatagactcgactattcgtgttactgacaatggaagggagagtattaacaaaaaagtaagaaacttaggatgttgatattctgattacatta |
116 |
Q |
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| T |
42683563 |
agtgcaatgatagactcgactattcgtgttactgacaatggaagggagagtattaacaaaaaagtaagaaacttaggatgttgatattctgattacatta |
42683662 |
T |
|
| Q |
117 |
attttcaatggcgtttgtttctttgagcaattaattgaatttagaaatttgtttgcaattcacaggtattatttattttcactgtatgtaatacttcaaa |
216 |
Q |
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| T |
42683663 |
attttcaatggcgtttgtttctttgagcaattaattgaatttagaaatttatttgcaattcacaggtattatttattttcactgtatgtaatacttcaaa |
42683762 |
T |
|
| Q |
217 |
tcaaagggataagcttaaggtttgtcacaactaaaaattcaaacaagttttttagtcgaaatttattttcattagattgattcatggtttaaattccata |
316 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42683763 |
tcaaagggataagcttaaggtttgtcaaaactaaaaattcaaacaagttttttagtcaaaatttattttcattagattgattcatggtttaaattccata |
42683862 |
T |
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| Q |
317 |
tatttatagttgggagcacgtagttcagaagaagctgcaaaatggatacgttctt |
371 |
Q |
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| T |
42683863 |
tatttatagttgggagcacgtagttcagaagaagctgcaaaatggatacgttctt |
42683917 |
T |
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