View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21014_high_18 (Length: 375)

Name: NF21014_high_18
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21014_high_18
NF21014_high_18
[»] chr5 (1 HSPs)
chr5 (1-288)||(28309655-28309945)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 28309945 - 28309655
Alignment:
Q  1 tgaaaatgctagcagtgttgttgtggccacaagagacaggctgagcttcagcatccacccagccgtagccactatgataggagccgaggaagacggagga 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||    
T  28309945 tgaaaatgctagcagtgttgttgtggccataagagacaggctgagcttcaacatccacccggccgtagccactgtgataggagccgaggaagaaggagga 28309846  T
Q  101 agggagccaccgtgaggagcagacattgtttgagaagaggaagatgaagattcaactggaatgaatgcaaactggaaagaaagaaaataggctttgtgag 200  Q
    |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28309845 agggagccatggtgaggagtagacattgtttgagaagaggaagatgaagattcaactggaatgaatgcaaactggaaagaaagaaaataggctttgtgag 28309746  T
Q  201 accgagagaaagattaacttaaatgcattat---attagcattggctcacaactacattatttattgaatacctattatcaactacgtaca 288  Q
    |||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28309745 accgagagaaagattaacttgaatgcattatattattagcattggctcacaactacattatttattgaatacctattatcaactacgtaca 28309655  T

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