View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_high_24 (Length: 351)
Name: NF21014_high_24
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 171 - 329
Target Start/End: Complemental strand, 43774617 - 43774453
Alignment:
| Q |
171 |
tttgcgagcatattcacgaggaagttagacaagattgggttagtat------gatagcaagacaataatccatgacaaaatggaatacaaagacagcaag |
264 |
Q |
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| T |
43774617 |
tttgcgagcatgttcacgaggaagtaagacaagactgggttagtattactatgataacaagacaataatccatgacaaaatggaaaacaaagacagcaag |
43774518 |
T |
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| Q |
265 |
tctcaagatctccataaatgaaattactaataagacattagtttaggatctcaaatcttcggtat |
329 |
Q |
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| T |
43774517 |
actcaagatctccataaattaaattactaataagacattattttaggatctcaaatcttcggtat |
43774453 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 43774930 - 43774766
Alignment:
| Q |
14 |
agatgtttggacatgagatcaagttatcaaaattgaagaatataaagtataaagtccaa----------tgatatatcacatacagacatggtggcaagc |
103 |
Q |
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| T |
43774930 |
agatgttcggacatgagatcatgttatcaaaattgaaggatataaagtataaagtccaactccaaccaatgatatattacatacagacatggtagcaaga |
43774831 |
T |
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| Q |
104 |
cacaggggaaaaacaacatcaataacgctatgctaattgagcagtgtcatgtcattcttaccaaact |
170 |
Q |
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| T |
43774830 |
cac--gggaaaaacaacattaataaagctgtgctaattgggcagtgccatgtcattgttaccaaact |
43774766 |
T |
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