View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21014_high_3 (Length: 672)

Name: NF21014_high_3
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21014_high_3
NF21014_high_3
[»] chr5 (12 HSPs)
chr5 (18-654)||(43229367-43230004)
chr5 (456-654)||(19554869-19555069)
chr5 (224-315)||(43239496-43239587)
chr5 (226-315)||(43246242-43246329)
chr5 (226-315)||(43252707-43252794)
chr5 (34-99)||(43225826-43225891)
chr5 (21-104)||(43246685-43246779)
chr5 (21-104)||(43253150-43253244)
chr5 (412-510)||(4921047-4921145)
chr5 (412-486)||(41697768-41697842)
chr5 (30-104)||(43258569-43258641)
chr5 (45-104)||(43254315-43254371)
[»] chr1 (5 HSPs)
chr1 (409-644)||(911471-911708)
chr1 (409-654)||(1048424-1048667)
chr1 (408-543)||(25017767-25017902)
chr1 (408-493)||(35950972-35951057)
chr1 (408-530)||(14591627-14591749)
[»] chr7 (4 HSPs)
chr7 (406-654)||(41085284-41085522)
chr7 (403-550)||(22491274-22491421)
chr7 (410-544)||(3765285-3765418)
chr7 (408-510)||(25749762-25749864)
[»] chr2 (3 HSPs)
chr2 (408-543)||(13039754-13039889)
chr2 (422-510)||(31642102-31642190)
chr2 (412-493)||(6192257-6192338)
[»] chr6 (3 HSPs)
chr6 (422-548)||(11416423-11416549)
chr6 (408-493)||(24164919-24165004)
chr6 (409-470)||(29794647-29794708)
[»] chr8 (3 HSPs)
chr8 (410-643)||(39565618-39565850)
chr8 (408-483)||(41312621-41312696)
chr8 (411-447)||(3461212-3461248)
[»] chr4 (3 HSPs)
chr4 (408-493)||(4728939-4729024)
chr4 (402-520)||(46308273-46308391)
chr4 (411-483)||(31522577-31522649)
[»] scaffold0294 (1 HSPs)
scaffold0294 (410-510)||(13932-14032)
[»] chr3 (3 HSPs)
chr3 (410-510)||(30676062-30676162)
chr3 (409-447)||(31543055-31543093)
chr3 (412-484)||(45775160-45775232)


Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 654
Target Start/End: Complemental strand, 43230004 - 43229367
Alignment:
Q  18 aaatggattcttaaacatttagggtatagtttgattggaaaatgaatcatatttatgagtgtgcaactcaacatttgtcaatacttttccctcnnnnnnn 117  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||           
T  43230004 aaatggattcttaaacatttaggatatagtttgattggaaaatgaatcatatttatgagtatgcaactcaacatttgtcaatacttttccctcaaaaaaa 43229905  T
Q  118 nn--tatttgtcaatacttttgaaataaataaatagtaaaacttatctttgaccnnnnnnnnnncttatcagttgtaactataataataattattggtta 215  Q
        |||||||||||||||| |||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||| ||||    
T  43229904 aaaatatttgtcaatactttcgaaataaataaatagtaaaacttatctttgaccaaaaaaaaa-cttatcagttgtaactataataataattattcgtta 43229806  T
Q  216 tggtttcgtcttacttgtttttcctatttactagctggtcaacccatgaaaatagggactttagaccattctctctttttaataaagagacaccttagat 315  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43229805 tggtttcgtcttacttgtttttcctatttactagttggtcaacccattaaaatagggactttagaccattctctcttttgaataaagagacaccttagat 43229706  T
Q  316 tatgaattgttgtatatcccactttattctattcaacccattaaaaaccgatattgtttatttgcttgagttctacatgttgcttctttaaaggtatgtt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  43229705 tatgaattgttgtatatcccactttattctattcaacccattagaaatcgatattgtttatttgtttgagttctacatgttgcttctttaagggtatgtt 43229606  T
Q  416 tgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaaggaaagaaaggattt 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |||||||||||||||||    
T  43229605 tgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttctatggtttggaactctctaaaatagtgaaggaaagaaaggattt 43229506  T
Q  516 atgtgaggcccacatcaaaaacctttccatccacacatgaatggaaagttttaagaataaaaatgttttgtttaaaattatcaatatgccccaactttca 615  Q
    ||||| |||| |||||| ||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43229505 atgtggggcctacatcagaaacctttccatccacacatggacggaaagttttaagaataaaagtgttttgtttaaaattatcaatatgccccaactttca 43229406  T
Q  616 ttatttattctttattcatttaactattcaattgttgtc 654  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43229405 ttatttattctttattcatttaactattcaattgttgtc 43229367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 456 - 654
Target Start/End: Original strand, 19554869 - 19555069
Alignment:
Q  456 ggaaagaaagactttccatagtttggaactctctaaaataataaaggaaagaaaggatttatgtgaggcccacatcaaaaacctttccatccacacatga 555  Q
    ||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||| |||| | |||| ||||||||||| || ||||||     
T  19554869 ggaaagaaagagtttccattgtttggaactctctaaaatagtgaaggaaagaaaggatttatgtggggcctatatcagaaacctttccacccgcacatgg 19554968  T
Q  556 at--ggaaagttttaagaataaaaatgttttgtttaaaattatcaatatgccccaactttcattatttattctttattcatttaactattcaattgttgt 653  Q
    |   ||||||||| ||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  19554969 acacggaaagtttcaagaatacaagtgttttgcttaaaattaccaatatgccccaactttcattatttattctttatcaatttaactattcaattattgt 19555068  T
Q  654 c 654  Q
    |    
T  19555069 c 19555069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 224 - 315
Target Start/End: Complemental strand, 43239587 - 43239496
Alignment:
Q  224 tcttacttgtttttcctatttactagctggtcaacccatgaaaatagggactttagaccattctctctttttaataaagagacaccttagat 315  Q
    ||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43239587 tcttacttgattttcctatttactagctgatcaacacattaaaatagggactttagaccattctctctttttaataaagagacacctcagat 43239496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 43246329 - 43246242
Alignment:
Q  226 ttacttgtttttcctatttactagctggtcaacccatgaaaatagggactttagaccattctctctttttaataaagagacaccttagat 315  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  43246329 ttacttgttttacctatttactagctggtcaacccattaaaatagggactttagaccatt--ctcttttgaataaagagacacctcagat 43246242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 43252794 - 43252707
Alignment:
Q  226 ttacttgtttttcctatttactagctggtcaacccatgaaaatagggactttagaccattctctctttttaataaagagacaccttagat 315  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  43252794 ttacttgttttacctatttactagctggtcaacccattaaaatagggactttagaccatt--ctcttttgaataaagagacacctcagat 43252707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 43225891 - 43225826
Alignment:
Q  34 atttagggtatagtttgattggaaaatgaatcatatttatgagtgtgcaactcaacatttgtcaat 99  Q
    |||||| ||||||||||||||  ||||||||||||||| ||||| |||||||||||||||||||||    
T  43225891 atttagtgtatagtttgattgataaatgaatcatatttgtgagtatgcaactcaacatttgtcaat 43225826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 43246779 - 43246685
Alignment:
Q  21 tggattcttaaacatttagggtatagtttgattggaaaatgaatc-----------atatttatgagtgtgcaactcaacatttgtcaatacttt 104  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||           |||||||||||| ||||||||||||||||||||||||||    
T  43246779 tggattcttaaacatttagtgtatagtttgattgaaaaatgaatcattatcatgagatatttatgagtatgcaactcaacatttgtcaatacttt 43246685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 43253244 - 43253150
Alignment:
Q  21 tggattcttaaacatttagggtatagtttgattggaaaatgaatc-----------atatttatgagtgtgcaactcaacatttgtcaatacttt 104  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||           |||||||||||| ||||||||||||||||||||||||||    
T  43253244 tggattcttaaacatttagtgtatagtttgattgaaaaatgaatcattatcatgagatatttatgagtatgcaactcaacatttgtcaatacttt 43253150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 412 - 510
Target Start/End: Original strand, 4921047 - 4921145
Alignment:
Q  412 tgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaaggaaagaaag 510  Q
    ||||||||| |||||||||||||||| ||| | ||| || ||| ||||||||| ||||||||| |||||||||||  |||||  |||| ||||||||||    
T  4921047 tgtttgttttaaaggaaagaaagtgaagagtagagaaagttgagggaaagaaacactttccattgtttggaactcattaaaaagataagggaaagaaag 4921145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 412 - 486
Target Start/End: Complemental strand, 41697842 - 41697768
Alignment:
Q  412 tgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactc 486  Q
    ||||||||| |||||||||||||||| ||||| ||| || ||| ||||||||| ||||||||| |||||||||||    
T  41697842 tgtttgttttaaaggaaagaaagtgaagaggagagaaagttgagggaaagaaacactttccattgtttggaactc 41697768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 43258641 - 43258569
Alignment:
Q  30 aaacatttagggtata-gtttgattggaaaatgaatcatatttatgagtgtgcaactcaacatttgtcaatacttt 104  Q
    |||||||||| ||||| ||||||||||||||||||||||||||  |||| |   ||||||||||||||||| ||||    
T  43258641 aaacatttagtgtataagtttgattggaaaatgaatcatatttgcgagtat---actcaacatttgtcaatgcttt 43258569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 43254371 - 43254315
Alignment:
Q  45 agtttgattggaaaatgaatcatatttatgagtgtgcaactcaacatttgtcaatacttt 104  Q
    |||||| |||||||||||||||||||| ||||| |   ||||||||||||||||| ||||    
T  43254371 agtttgtttggaaaatgaatcatatttgtgagtat---actcaacatttgtcaatgcttt 43254315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 409 - 644
Target Start/End: Complemental strand, 911708 - 911471
Alignment:
Q  409 gtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaaggaaagaa 508  Q
    |||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||||    
T  911708 gtatatttgtttcaaaggaaagaaagtgatgaggagagaaaggtgatggaaagaaagacttttcatggtttggagctctctaaaataatgaaggaaagaa 911609  T
Q  509 aggatttatgtgaggcccacatcaaaaacctttccatccacacatgaatggaaagttttaagaataaaaatgttttgtttaaaattatcaatatgcccca 608  Q
    |||||||||||| || |||||||| |||||||| || ||||||||| | |||| ||||  | |||| || ||||||||||||||||| ||||||||||||    
T  911608 aggatttatgtggggtccacatcagaaaccttttcacccacacatggacggaaggtttccacaatacaagtgttttgtttaaaattaccaatatgcccca 911509  T
Q  609 actttcattatttat--tctttattcatttaactattc 644  Q
    ||||| |||||||||  |||||||||||||||||||||    
T  911508 acttttattatttattctctttattcatttaactattc 911471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 409 - 654
Target Start/End: Complemental strand, 1048667 - 1048424
Alignment:
Q  409 gtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaaggaaagaa 508  Q
    |||| |||||||||||||||||||||||||||||| ||| ||   | ||||| ||||| ||| ||| ||||||||||||||||||     ||||||||||    
T  1048667 gtatatttgtttcaaaggaaagaaagtgatgaggagagaaagacaagggaaaaaaagagttttcattgtttggaactctctaaaaaggataaggaaagaa 1048568  T
Q  509 aggatttatgtgaggcccacatcaaaaacctttccatccacacatgaatggaaagttttaagaataaaaatgttttgtttaaaattatcaatatgcccca 608  Q
    || ||||| ||| || |||  | | ||||||||||| ||| |   | | |||||| || ||||||  |  |||||||||| ||||   ||| ||||||||    
T  1048567 agaatttacgtg-gggccatgtgagaaacctttccacccatatgagcacggaaagcttcaagaatgcatgtgttttgttt-aaatacccaaaatgcccca 1048470  T
Q  609 actttcattatttattctttattcatttaactattcaattgttgtc 654  Q
    ||||| |||||||||||||||||||||| | ||||||||| |||||    
T  1048469 acttttattatttattctttattcattttattattcaatttttgtc 1048424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 408 - 543
Target Start/End: Original strand, 25017767 - 25017902
Alignment:
Q  408 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctct-aaaataataaaggaaag 506  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||  |||| ||||| || ||||  |  ||||||||    
T  25017767 ggtatgtttgtttcaaaggaaagaaagtgatgaggagagaaaggtgagggaaggaaagactttccattatttgaaactcactcaaaaagactaaggaaag 25017866  T
Q  507 aaaggatttatgtgaggcccacatcaaaaacctttcc 543  Q
    |||| ||||| ||| | ||||||  ||||||||||||    
T  25017867 aaagaattta-gtgggacccacactaaaaacctttcc 25017902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 408 - 493
Target Start/End: Complemental strand, 35951057 - 35950972
Alignment:
Q  408 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaa 493  Q
    |||||||||||||||| ||||||||||||||||||||||| |||| | |||||||||  |||||  | ||||||||||| ||||||    
T  35951057 ggtatgtttgtttcaagggaaagaaagtgatgaggaaagaaaggttagggaaagaaaatctttctgttgtttggaactccctaaaa 35950972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 530
Target Start/End: Original strand, 14591627 - 14591749
Alignment:
Q  408 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaaggaaaga 507  Q
    |||||||||||||||| ||||||||||||||||||| ||| || ||| ||||| |||| ||||   | ||||||| ||| ||||||   | |||||||||    
T  14591627 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaagatgagggaaaaaaagcctttatgttgtttggatctccctaaaaaggtgaaggaaaga 14591726  T
Q  508 aaggatttatgtgaggcccacat 530  Q
    ||| |||| |||||| |||||||    
T  14591727 aagaatttttgtgagacccacat 14591749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 5e-64; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 406 - 654
Target Start/End: Complemental strand, 41085522 - 41085284
Alignment:
Q  406 aaggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaaggaaa 505  Q
    |||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||| | |||||||    
T  41085522 aaggtatgtttgtttcaaaggaaagaaagtgacgaggagagaaaggtggtggaaagaaagactttccattgtttggaactctctaaaatagtgaaggaaa 41085423  T
Q  506 gaaaggatttatgtgaggcccacatcaaaaacctttccatccacacatgaatggaaagttttaagaataaaaatgttttgtttaaaattatcaatatgcc 605  Q
    |||| |||||||||| ||||   || | ||||||||||| ||||||||| |  |||||||| |||        |||||||||| |||||| |||||||||    
T  41085422 gaaaagatttatgtggggcc--tataagaaacctttccacccacacatggaccgaaagtttcaag--------tgttttgtttgaaattaccaatatgcc 41085333  T
Q  606 ccaactttcattatttattctttattcatttaactattcaattgttgtc 654  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  41085332 ccaactttcattatttattctttatttgtttaactattcaattgttgtc 41085284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 403 - 550
Target Start/End: Original strand, 22491274 - 22491421
Alignment:
Q  403 ttaaaggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaagg 502  Q
    |||| |||||||||||||||| |||||||||||||||| || ||| |||||| |||||||||| |||||||| |||||||| || ||||||  || ||||    
T  22491274 ttaagggtatgtttgtttcaagggaaagaaagtgatgacgagagaaaggtgaaggaaagaaagcctttccattgtttggaattccctaaaaagatgaagg 22491373  T
Q  503 aaagaaaggatttatgtgaggcccacatcaaaaacctttccatccaca 550  Q
    |||||||| || |||||| | ||||| ||| ||| ||||||| |||||    
T  22491374 aaagaaagaatatatgtgggacccacgtcagaaagctttccacccaca 22491421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 410 - 544
Target Start/End: Original strand, 3765285 - 3765418
Alignment:
Q  410 tatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaaggaaagaaa 509  Q
    ||||||||||| |||||||||||||||| ||||| ||| |||||| ||||||||||  |||| || ||||||||||||| ||||  || |||||||||||    
T  3765285 tatgtttgttttaaaggaaagaaagtga-gaggagagaaaggtgaaggaaagaaagtttttctattgtttggaactctccaaaaagattaaggaaagaaa 3765383  T
Q  510 ggatttatgtgaggcccacatcaaaaacctttcca 544  Q
    | || || ||| | ||||| ||| ||| |||||||    
T  3765384 gaatatacgtgggtcccacgtcagaaatctttcca 3765418  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 510
Target Start/End: Original strand, 25749762 - 25749864
Alignment:
Q  408 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctct-aaaataataaaggaaag 506  Q
    |||||||||||||| | |||| |||||||||||||| ||| |||||| |||| |||||||||||||| ||||||||||| || ||||  || ||||||||    
T  25749762 ggtatgtttgtttcgagggaa-gaaagtgatgaggagagaaaggtgagggaaggaaagactttccattgtttggaactcactcaaaaagattaaggaaag 25749860  T
Q  507 aaag 510  Q
    ||||    
T  25749861 aaag 25749864  T

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Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 408 - 543
Target Start/End: Complemental strand, 13039889 - 13039754
Alignment:
Q  408 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaaggaaaga 507  Q
    ||||||||||||| |||||||||||||||||||||||| | |||||| ||||| ||||||||| | | ||||||||||||||||||   |  ||||||||    
T  13039889 ggtatgtttgttttaaaggaaagaaagtgatgaggaaaaaaaggtgagggaaataaagactttgctttgtttggaactctctaaaaaggtgtaggaaaga 13039790  T
Q  508 aaggatttatgtgaggcccacatcaaaaacctttcc 543  Q
    ||| || |||||| | ||||| || |||| ||||||    
T  13039789 aagaatatatgtgggacccacgtctaaaatctttcc 13039754  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 510
Target Start/End: Original strand, 31642102 - 31642190
Alignment:
Q  422 aaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaaggaaagaaag 510  Q
    |||||||||||||||| ||||| ||| || ||| ||||||||| ||||| ||| ||||| |||||| ||| | | ||| ||||||||||    
T  31642102 aaaggaaagaaagtgaagaggagagaaagttgaaggaaagaaacacttttcattgtttgaaactctttaagaaagtaagggaaagaaag 31642190  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 493
Target Start/End: Complemental strand, 6192338 - 6192257
Alignment:
Q  412 tgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaa 493  Q
    |||||||||| ||||||||| ||||   |||||||| || ||| ||||||||| | |||| || |||||||||||| |||||    
T  6192338 tgtttgtttctaaggaaagatagtgggtaggaaagaaagttgagggaaagaaatattttctattgtttggaactctttaaaa 6192257  T

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Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 422 - 548
Target Start/End: Complemental strand, 11416549 - 11416423
Alignment:
Q  422 aaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaaggaaagaaaggatttatgtga 521  Q
    |||||||||||||||||||||| ||| |||| | ||||||||||| ||||||| |||||||| |||||||||     |||||||||||| ||||| |||     
T  11416549 aaaggaaagaaagtgatgaggagagaaaggtaagggaaagaaagagtttccattgtttggaattctctaaaaagggtaaggaaagaaagaatttacgtgg 11416450  T
Q  522 ggcccacatcaaaaacctttccatcca 548  Q
    ||||||| | | |||||||| ||||||    
T  11416449 ggcccacgtgagaaaccttttcatcca 11416423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 408 - 493
Target Start/End: Original strand, 24164919 - 24165004
Alignment:
Q  408 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaa 493  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||| |||||||||  ||||| || ||||||| ||| ||||||    
T  24164919 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaaacctttctattgtttggatctccctaaaa 24165004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 470
Target Start/End: Original strand, 29794647 - 29794708
Alignment:
Q  409 gtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagacttt 470  Q
    ||||||||||||||||||||||||||||| ||||||| | || | | |||||||||| ||||    
T  29794647 gtatgtttgtttcaaaggaaagaaagtgaagaggaaaaaaagattagggaaagaaagtcttt 29794708  T

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Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 410 - 643
Target Start/End: Original strand, 39565618 - 39565850
Alignment:
Q  410 tatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaaggaaagaaa 509  Q
    |||||||||||||| ||||||| ||||| ||||| ||| ||||   ||||||||||||||||||| ||||||||||||| ||||   | |||||||||||    
T  39565618 tatgtttgtttcaagggaaagatagtgaggaggagagaaaggttggggaaagaaagactttccattgtttggaactctccaaaaaggtgaaggaaagaaa 39565717  T
Q  510 ggatttatgtgaggcccacatcaaaaacctttccatccacacatgaatggaaagttttaagaataaaaatgttttgtttaaaattatcaatatgccccaa 609  Q
    | || |||||| | ||||| | | ||| ||||||   ||||  || |||||||||   | ||| | |  |||||||||||||||    || |||||||||    
T  39565718 gaatatatgtgggacccaccttagaaatctttccccacacatttggatggaaagtaggaggaa-acatgtgttttgtttaaaatgtctaaaatgccccaa 39565816  T
Q  610 ctttcattatttattctttattcatttaactatt 643  Q
    |||| |||||||||| || |||||||| ||||||    
T  39565817 cttttattatttatttttaattcattttactatt 39565850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 483
Target Start/End: Original strand, 41312621 - 41312696
Alignment:
Q  408 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaa 483  Q
    |||||||||||||||| |||||||||||| |||||||||| ||||||  |||||||| ||||| ||| ||||||||    
T  41312621 ggtatgtttgtttcaatggaaagaaagtgttgaggaaagaaaggtgagtgaaagaaacacttttcattgtttggaa 41312696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 3461248 - 3461212
Alignment:
Q  411 atgtttgtttcaaaggaaagaaagtgatgaggaaaga 447  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3461248 atgtttgtttcaaaggaaataaagtgatgaggaaaga 3461212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 408 - 493
Target Start/End: Original strand, 4728939 - 4729024
Alignment:
Q  408 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaa 493  Q
    ||||||||||||| ||||||||||||||||||| || ||| |||||| ||||| ||||| ||||| ||||||||||||||| ||||    
T  4728939 ggtatgtttgttttaaaggaaagaaagtgatgaagagagaaaggtgagggaaaaaaagattttccctagtttggaactctccaaaa 4729024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 402 - 520
Target Start/End: Complemental strand, 46308391 - 46308273
Alignment:
Q  402 tttaaaggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaag 501  Q
    ||||| |||||||||||||||| |||||||||||| |||||| ||| |||||||||| |||||| |||||  | ||||||| ||| ||||||   | |||    
T  46308391 tttaagggtatgtttgtttcaagggaaagaaagtggtgaggagagaaaggtgatggagagaaagtctttctgttgtttggatctccctaaaaaggtgaag 46308292  T
Q  502 gaaagaaaggatttatgtg 520  Q
    ||||||||| |||| ||||    
T  46308291 gaaagaaagaatttttgtg 46308273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 411 - 483
Target Start/End: Complemental strand, 31522649 - 31522577
Alignment:
Q  411 atgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaa 483  Q
    ||||||||||||| ||||||||||||| | ||||||| |||||| ||||||||| ||||||||| ||||||||    
T  31522649 atgtttgtttcaatggaaagaaagtgacgtggaaagaaaggtgagggaaagaaacactttccattgtttggaa 31522577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 510
Target Start/End: Complemental strand, 14032 - 13932
Alignment:
Q  410 tatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaaggaaagaaa 509  Q
    |||||||||||||| ||||||  ||||| ||||| ||| ||||   ||||||||||||||| ||| ||||||||||||| ||||   | |||||||||||    
T  14032 tatgtttgtttcaagggaaaggtagtgaggaggagagaaaggttggggaaagaaagacttttcattgtttggaactctccaaaaaggtgaaggaaagaaa 13933  T
Q  510 g 510  Q
    |    
T  13932 g 13932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 510
Target Start/End: Complemental strand, 30676162 - 30676062
Alignment:
Q  410 tatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaactctctaaaataataaaggaaagaaa 509  Q
    ||||||| |||||| ||||| | ||||| ||||| ||| ||||   ||||||||||| ||||||| ||||||||||||| ||||   | |||||||||||    
T  30676162 tatgtttatttcaagggaaaaatagtgaggaggagagaaaggttggggaaagaaagattttccattgtttggaactctccaaaaaggtgaaggaaagaaa 30676063  T
Q  510 g 510  Q
    |    
T  30676062 g 30676062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 31543055 - 31543093
Alignment:
Q  409 gtatgtttgtttcaaaggaaagaaagtgatgaggaaaga 447  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  31543055 gtatgtttgtttcaatggaaagaaagtgacgaggaaaga 31543093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 412 - 484
Target Start/End: Complemental strand, 45775232 - 45775160
Alignment:
Q  412 tgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagactttccatagtttggaac 484  Q
    ||||||||||||||||||||  |||| | ||| ||| || |  |||||||||| | |||||||||||||||||    
T  45775232 tgtttgtttcaaaggaaagattgtgagggggagagaaagattgtggaaagaaacattttccatagtttggaac 45775160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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