View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_high_31 (Length: 308)
Name: NF21014_high_31
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 6643714 - 6643425
Alignment:
| Q |
1 |
tagttttttatgtaggatgtttgttttttgcggagcgagtatcccttgtattcttctcgatttgtggattaagtaatgtttgtacttctctcattatata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
6643714 |
tagttttttatgtaggatgtttgttttttgcggagcgagtatccgttgtatttttctcgatttgtggattaagtactgtttgtatttctctcattatata |
6643615 |
T |
|
| Q |
101 |
ataaattttcttgtgnnnnnnnnnggtaaacacataatctgcattctttaattaaatattttaaaaacataagctacgaaatactagtaattgtaaaaaa |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||| |
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| T |
6643614 |
ataaattttcttgtgaaaaaaa--ggtaaacacataatctgcattctttaattaaatattttaaaaacataagctacaaaatactagtgatcgtaaaaaa |
6643517 |
T |
|
| Q |
201 |
tcaactcctttatcacaaactttagtaactaaattaaagaggaatttcatgttttcgctctcttaatttcctttgttaatttatgctatttt |
292 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6643516 |
tcaactcctttatcataaactttagtgactaaattaaagaggaatttcatgttttcgcactcttaatttcctttgttaatttatgctatttt |
6643425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 33810643 - 33810560
Alignment:
| Q |
24 |
ttttttgcggagcgagtatcccttgtattcttctcgatttgtggattaagtaatgtttgtacttctctcattatataataaatt |
107 |
Q |
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|||||||| | |||| ||||||||||| | ||| |||||||||| ||||||| | |||||| ||||||| |||| ||||||||| |
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| T |
33810643 |
ttttttgccgggcgaatatcccttgtacttttcccgatttgtgggttaagtactttttgtaattctctctttatctaataaatt |
33810560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 38956461 - 38956569
Alignment:
| Q |
1 |
tagttttttatgtaggatgtttgttttttgcggagcgagtatcccttgtattcttctcgatttgtggattaagtaatgtttgtacttctctcattatata |
100 |
Q |
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| T |
38956461 |
tagttcttgatgtagggtgtttgctcattgtggggcgaataccccttgtatttttcttgatttgtgggttaagtactctttgtacttctcttattatata |
38956560 |
T |
|
| Q |
101 |
ataaatttt |
109 |
Q |
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|||| |||| |
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| T |
38956561 |
ataattttt |
38956569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 29566595 - 29566504
Alignment:
| Q |
18 |
tgtttgttttttgcggagcgagtatcccttgtattcttctcgatttgtggattaagtaatgtttgtacttctctcattatataataaatttt |
109 |
Q |
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||||| |||| | |||||||||||||||||||| | ||||||| |||||| ||||||| | | ||||||||||||||| |||||| |||| |
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| T |
29566595 |
tgttttttttcttcggagcgagtatcccttgtaattttctcgaattgtgggttaagtactccatatacttctctcattatctaataattttt |
29566504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 4912338 - 4912225
Alignment:
| Q |
1 |
tagttttttatgtaggatgtttgttttttgcggagcgagtatcccttgtattcttctcgatttgtggattaagtaatgtttgtacttctctcattatata |
100 |
Q |
| |
|
||||| || ||||||| ||||||||||||| || || ||||||| ||||| | || || ||| ||| ||||||| | ||| |||||||| |||||||| |
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| T |
4912338 |
tagttcttgatgtagggtgtttgttttttgtggggcaagtatcctttgtacttttttcagtttatgggttaagtactctttatacttctcctattatata |
4912239 |
T |
|
| Q |
101 |
ataaattttcttgt |
114 |
Q |
| |
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||||||||| |||| |
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|
| T |
4912238 |
ataaattttgttgt |
4912225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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