View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_high_34 (Length: 300)
Name: NF21014_high_34
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 30292022 - 30291792
Alignment:
| Q |
19 |
attcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtataccagcaaggaagctcctctggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292022 |
attcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtataccagcaaggaagctcctctggt |
30291923 |
T |
|
| Q |
119 |
tgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaacatcacctggaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30291922 |
tgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaacatcacctggagt |
30291823 |
T |
|
| Q |
219 |
caacctagccctgtacctttgcacctgttgg |
249 |
Q |
| |
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|||||||||||||||||||||||| |||||| |
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| T |
30291822 |
caacctagccctgtacctttgcacttgttgg |
30291792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 30304656 - 30304426
Alignment:
| Q |
19 |
attcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtataccagcaaggaagctcctctggt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304656 |
attcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtataccagcaaggaagctcctctggt |
30304557 |
T |
|
| Q |
119 |
tgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaacatcacctggaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304556 |
tgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaacatcacctggagt |
30304457 |
T |
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| Q |
219 |
caacctagccctgtacctttgcacctgttgg |
249 |
Q |
| |
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|||||||||||||||||||||||| |||||| |
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| T |
30304456 |
caacctagccctgtacctttgcacttgttgg |
30304426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 30286988 - 30286758
Alignment:
| Q |
19 |
attcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtataccagcaaggaagctcctctggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | |
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| T |
30286988 |
attcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtataccagcaaggaagttcctttgat |
30286889 |
T |
|
| Q |
119 |
tgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaacatcacctggaga |
218 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||||| |||||||||||||||||||||||||| |
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| T |
30286888 |
tgttctccgcattgataccaaatccaagcaaagagagatccgaagaagcagttacgacaattggatgacctgccggaattacataaacatcacctggaga |
30286789 |
T |
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| Q |
219 |
caacctagccctgtacctttgcacctgttgg |
249 |
Q |
| |
|
|||||||||||| |||||||| || |||||| |
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| T |
30286788 |
caacctagccctatacctttgtacttgttgg |
30286758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 30315575 - 30315339
Alignment:
| Q |
19 |
attcaatttaatttaattttggtaggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagctcc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||| |||||| |||||||||||| ||| |
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| T |
30315575 |
attcaatttaatttaattttggtagaaaactattgtaattaggccatacagaaggaaagagaccgagtgagaatatagtatataccagcaaggaagttcc |
30315476 |
T |
|
| Q |
113 |
tctggttgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaacatcacc |
212 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |||||| |||||||||||||||||||| |
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| T |
30315475 |
tctgattgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcctttacgacaattggatgacctgcgggaattacataaacatcacc |
30315376 |
T |
|
| Q |
213 |
tggagacaacctagccctgtacctttgcacctgttgg |
249 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||||| |
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| T |
30315375 |
tggagacaacctagccctatacctttgtacttgttgg |
30315339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 95 - 249
Target Start/End: Complemental strand, 30299370 - 30299216
Alignment:
| Q |
95 |
taccagcaaggaagctcctctggttgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctgg |
194 |
Q |
| |
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|||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| |||||| |||||| || |
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| T |
30299370 |
tacctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcgctaacgacagttggatgacctgccgg |
30299271 |
T |
|
| Q |
195 |
aattacataaacatcacctggagacaacctagccctgtacctttgcacctgttgg |
249 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
30299270 |
aattacatacacatcacctggagacaacctagctctgtacctttgcacttgttgg |
30299216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 242
Target Start/End: Complemental strand, 46810335 - 46810184
Alignment:
| Q |
91 |
agtataccagcaaggaagctcctctggttgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctg |
190 |
Q |
| |
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|||||||| ||||| ||| | ||||| ||||||||||||||||||||||| ||||| ||| ||||| ||| ||||| |||| | | ||| | ||||| |
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| T |
46810335 |
agtatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaaggaaattgagattcgaggaagcatttatggctactgggtgacctg |
46810236 |
T |
|
| Q |
191 |
ctggaattacataaacatcacctggagacaacctagccctgtacctttgcac |
242 |
Q |
| |
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| ||||||| | ||| || |||||||||| |||||| ||||||| ||||| |
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| T |
46810235 |
ccggaattataacaacgtcgcctggagacagcctagcgttgtacctctgcac |
46810184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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