View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_high_36 (Length: 283)
Name: NF21014_high_36
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 6804021 - 6803857
Alignment:
| Q |
7 |
tgatatgaattataatttagtgtctgtatctatattgagcaaagcgggcataaaaactaattttgattcagacaaagttctactttcaaaatgagggggt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
6804021 |
tgatatgaattataatttagtgtctgtatctatattgagcaaagcgggcataaaaactaattttgattcaggcaaagttctactttcaaaatgtgggggc |
6803922 |
T |
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| Q |
107 |
tttgtaggcaaaggtttttatagtaatggtttatttgttttagatgtttttaaagttatgaatga |
171 |
Q |
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| T |
6803921 |
tttgtaggcaaaggtttctatagtaatggtttatttattttagatgtttctaaagttatgaatga |
6803857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 6803727 - 6803630
Alignment:
| Q |
167 |
aatgataagtgtccaatatgtgtagaagctaaaagtacaaagaagtcttgtaaacctatagagtttcgtgaaatcgaacttttaggtttaattcattc |
264 |
Q |
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| T |
6803727 |
aatgataagtgttcaatatgtgtagaagctaaaattacaaagaagtcttgtaaacctatagagtttcgtgaaaccgaacttttaggtttaattcattc |
6803630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 14059920 - 14060055
Alignment:
| Q |
9 |
atatgaattataatttagtgtctgtatctatattgagcaaagcgggcataaaaactaattttgattcagacaaagttctactttcaaaatgagggggttt |
108 |
Q |
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| T |
14059920 |
atatgagttataatttggtgtctgtgtctatattgagcaaagcgggtgtaacagtcacttttgaatcaaacaaagttttactttcaaaatgtgggggctt |
14060019 |
T |
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| Q |
109 |
tgtaggcaaaggtttttatagtaatggtttatttgt |
144 |
Q |
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| T |
14060020 |
tgtaggcaaaggattttatagtaatggtgtatttgt |
14060055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 26972704 - 26972569
Alignment:
| Q |
9 |
atatgaattataatttagtgtctgtatctatattgagcaaagcgggcataaaaactaattttgattcagacaaagttctactttcaaaatgagggggttt |
108 |
Q |
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|||||| ||||||||| |||| ||| |||||||||||||||||||| ||| | | |||||| ||| |||||||| ||||||||||||| ||||| || |
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| T |
26972704 |
atatgagttataatttggtgtatgtgtctatattgagcaaagcgggtgtaacagtcacttttgaatcaaacaaagttttactttcaaaatgtgggggctt |
26972605 |
T |
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| Q |
109 |
tgtaggcaaaggtttttatagtaatggtttatttgt |
144 |
Q |
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| T |
26972604 |
tgtaggcaaaggattttatagtaacgatttatttgt |
26972569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 53730563 - 53730464
Alignment:
| Q |
9 |
atatgaattataatttagtgtctgtatctatattgagcaaagcgggcataaaaactaattttgattcagacaaagttctactttcaaaatgagggggttt |
108 |
Q |
| |
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|||||| ||||||||| |||||||| |||||||||||||||| ||| ||| | | |||||| ||| ||||||| ||||||||||||| |||||||| |
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| T |
53730563 |
atatgagttataatttggtgtctgtgtctatattgagcaaagtgggtgtaacagtcacttttgaatcaaacaaagtcttactttcaaaatgtgggggttt |
53730464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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