View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_high_38 (Length: 273)
Name: NF21014_high_38
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 151420 - 151511
Alignment:
| Q |
167 |
tcaaattttaacgtgggtgacatgattttgtgaaagaaacaaacatatatttgcttgtttcaatttaaattgctgttttttattcttaaaag |
258 |
Q |
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| T |
151420 |
tcaaattttaacgtgggtgacatgattttgtgaaagaaacaaacatgtatttgcttgtttcaatttaaattgctggtttttattcttaaaag |
151511 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 151233 - 151294
Alignment:
| Q |
1 |
ttttcttcatatattcactccttttctttcaatgtatttagtctaaaatttgtaacaaatac |
62 |
Q |
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| T |
151233 |
ttttcttcatatattcactccttttctttcaatgtatttagtctaaaatttgtaacaaatac |
151294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 166
Target Start/End: Original strand, 151369 - 151398
Alignment:
| Q |
137 |
ataatcatttatcagaaaatcaaaatcttt |
166 |
Q |
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| T |
151369 |
ataatcatttatcagaaaatcaaaatcttt |
151398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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