View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21014_high_58 (Length: 217)

Name: NF21014_high_58
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21014_high_58
NF21014_high_58
[»] chr8 (5 HSPs)
chr8 (4-202)||(31646901-31647098)
chr8 (93-181)||(31638332-31638421)
chr8 (107-165)||(31630904-31630962)
chr8 (108-166)||(31657248-31657306)
chr8 (108-169)||(31652441-31652502)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 31647098 - 31646901
Alignment:
Q  4 aatattgttgtgtagagataccaacctacaataatcccctcaacnnnnnnnnnnnnnnnnngcctacaataatgtttatttaggtatggaccatttacca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||    
T  31647098 aatattgttgtgtagagataccaacctacaataatcccctcaacaaaaaaacaaaaaaaaa-cctacaataatgtttatttaggtatggaccatttacca 31647000  T
Q  104 actcgcatccatttggtacatgaccatttatcacccttaatcactggacaagcacctgaaaatcataacgcacatatacgagtgtaaatctagagtttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31646999 actcgcatccatttggtacatgaccatttatcacccttaatcactggacaagcacctgaaaatcataacgcacatatacgagtgtaaatctagagtttt 31646901  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 31638421 - 31638332
Alignment:
Q  93 accatttaccaactcgcatccatttggtacatgaccatttatcacccttaatcactggacaagcacctg-aaaatcataacgcacatata 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| || ||||||||    
T  31638421 accatttaccaactcgcatccatttggtacatgaccatttatcacccttgataactggacaagcacctgaaaaatcatcacacacatata 31638332  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 31630962 - 31630904
Alignment:
Q  107 cgcatccatttggtacatgaccatttatcacccttaatcactggacaagcacctgaaaa 165  Q
    ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  31630962 cgcatccatttggtacatgaccacttatcacccttgatcacaggacaagcacctgaaaa 31630904  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 31657306 - 31657248
Alignment:
Q  108 gcatccatttggtacatgaccatttatcacccttaatcactggacaagcacctgaaaat 166  Q
    ||||||||||||  |||||||| ||||| ||||| ||||| ||||||||||||||||||    
T  31657306 gcatccatttggcgcatgaccacttatcgcccttgatcacaggacaagcacctgaaaat 31657248  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 31652502 - 31652441
Alignment:
Q  108 gcatccatttggtacatgaccatttatcacccttaatcactggacaagcacctgaaaatcat 169  Q
    |||||||||| | |||| |||| ||||| ||||| ||||| |||||||||||||||||||||    
T  31652502 gcatccatttagcacataaccacttatctcccttgatcacaggacaagcacctgaaaatcat 31652441  T

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