View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21014_high_6 (Length: 600)

Name: NF21014_high_6
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21014_high_6
NF21014_high_6
[»] chr1 (4 HSPs)
chr1 (11-266)||(9536084-9536339)
chr1 (297-503)||(9535879-9536086)
chr1 (505-584)||(9535741-9535820)
chr1 (347-494)||(27272207-27272356)
[»] chr7 (1 HSPs)
chr7 (274-450)||(16192154-16192330)
[»] chr5 (1 HSPs)
chr5 (320-494)||(17349939-17350117)
[»] scaffold0013 (1 HSPs)
scaffold0013 (336-471)||(6104-6241)
[»] chr6 (1 HSPs)
chr6 (320-451)||(23142308-23142442)
[»] chr4 (2 HSPs)
chr4 (336-453)||(3462253-3462372)
chr4 (274-503)||(17279071-17279294)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 9536339 - 9536084
Alignment:
Q  11 cataggattggtgggaaggtgctcaacgtcgtataacggtcaatgatgtagaaatcaattgggctagttttaagaaagcaataatggagaagtaccttcc 110  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9536339 cataagattggtgggaaggtgctcaacgtcgtatgacggtcaatgatgtagaaatcaattgggctagttttaagaaagcaataatggagaagtaccttcc 9536240  T
Q  111 aaagtctttcaagattaagaaagagcaagaatttctggaacttaagcaagggaacatgccaatgcatgaaggggtcaagaatatgttatgcatgaaagca 210  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||||||    
T  9536239 gaagtctttcaagattaagaaagagcaagaatttctggaacttaagcaagggaacatgtcaataaatgaaggggtcaaggatatgttatgcatgaaagca 9536140  T
Q  211 gctggggcgttttataaccgagtgtccaaataggaaaggcaaaagtgggactgagg 266  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9536139 gctggggcattttataaccgagtgtccaaataggaaaggcaaaagtgggactgagg 9536084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 297 - 503
Target Start/End: Complemental strand, 9536086 - 9535879
Alignment:
Q  297 aggaagttcgctagaggatgggatgaatagcgtttttcgtttt-caaaattttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgttt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  9536086 aggaagttcgctagaggatgggatgaatagcgtttttcgtttttcaattttttttaggaatacatggattaaaaagagtatgactattgaatctgtgttt 9535987  T
Q  396 gatgatgataaaaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaatttaaatatttaatcttttagaacaaatcaacaatcaatat 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9535986 gatgatgataaaaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaatttaaatatttaatcttttagaacaaatcaacaatcaatac 9535887  T
Q  496 aaatacat 503  Q
    ||||||||    
T  9535886 aaatacat 9535879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 505 - 584
Target Start/End: Complemental strand, 9535820 - 9535741
Alignment:
Q  505 ttctgttagatgtggaaggatttccaacaacacctctactcagaattttacattgattaacgtcaccataagagacaata 584  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  9535820 ttctgctagatgtggaaggatttccaacaacacctctactcagaattttacattgattaatatcaccacaagagacaata 9535741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 494
Target Start/End: Complemental strand, 27272356 - 27272207
Alignment:
Q  347 ttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtg 445  Q
    |||||| ||| | |||||||| ||||||||||||||||||| |||||  ||  ||||||| |||| ||| |||||||| ||||||||  |||||||| ||    
T  27272356 ttttgcaaaagcgtggattaacaagagtatgactattgaatttgtgtgcgacaatgataacaaaattaaaacaatgaaaatcaaataatattcaaagctg 27272257  T
Q  446 aattgaga-atttaaatatttaatcttttagaacaaatcaacaatcaata 494  Q
    ||||||||  || ||||| | |||||| |  |||||||||| ||||||||    
T  27272256 aattgagaggttcaaataatgaatcttatgaaacaaatcaataatcaata 27272207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 274 - 450
Target Start/End: Complemental strand, 16192330 - 16192154
Alignment:
Q  274 tgttagtctatatgacaaactataggaagttcgctagaggatgggatgaatagcgtttttcgtt-ttcaaaattttttgcgaaaacatggattaaaaaga 372  Q
    ||||||||||||||||||||||   ||||| |||||||||  ||  | |||||| ||||||||| |||||||  |||||| ||||| |||||||| ||||    
T  16192330 tgttagtctatatgacaaactaa--gaagtgcgctagaggggggtgtcaatagcatttttcgttcttcaaaaggttttgcaaaaacgtggattaacaaga 16192233  T
Q  373 gtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattg 450  Q
    |||||||||| |||| ||||  | |||||||||| |||| || |||||||||||||||||| |||||||| ||||||||    
T  16192232 gtatgactatcgaatttgtgcgtaatgatgataacaaaattaggacaatgaatatcaaataagattcaaatgtgaattg 16192154  T

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Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 320 - 494
Target Start/End: Complemental strand, 17350117 - 17349939
Alignment:
Q  320 tgaatagcgtttttcgtttt-caaaattttttgcgaaaacatggattaa-aaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaaga 416  Q
    |||||| ||||||||||||| |||||  |||||| ||| | |||||||| |||||||||||||||||||| |||| ||  ||||||||| |||| |||||    
T  17350117 tgaataacgtttttcgtttttcaaaagattttgcaaaagcgtggattaacaaagagtatgactattgaatttgtgcttagtgatgataacaaaattaaga 17350018  T
Q  417 caatgaatatcaaatatgattcaaaggtgaattgagaa-tttaaatatttaatcttttagaacaaatcaacaatcaata 494  Q
    ||||||| || || || ||||||||||||||||||||| || ||||| | | |||| || |  ||||||||||||||||    
T  17350017 caatgaaaataaactaagattcaaaggtgaattgagaagttcaaataatgactcttataaagaaaatcaacaatcaata 17349939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 336 - 471
Target Start/End: Original strand, 6104 - 6241
Alignment:
Q  336 ttttcaaaattttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatg 434  Q
    |||||||||  |||||||||||| |||||| | || | |||||||||||||| ||||  |||||||||||| |||| |||||||||||||| |||||| |    
T  6104 ttttcaaaaggttttgcgaaaacgtggattcacaaaactatgactattgaatttgtgcatgatgatgataacaaaattaagacaatgaataacaaataag 6203  T
Q  435 attcaaaggtgaattgaga-atttaaatatttaatctt 471  Q
    |||||||| | |||||||| ||||||||| | ||||||    
T  6204 attcaaagctaaattgagagatttaaataatgaatctt 6241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 320 - 451
Target Start/End: Original strand, 23142308 - 23142442
Alignment:
Q  320 tgaatagcgtttttcg--ttttcaaaattttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaaga 416  Q
    ||||||||||||||||  |||| |||  ||||||||||| | ||||||||  | |||| || |||||||| ||||  |||||||||||| |||| |||||    
T  23142308 tgaatagcgtttttcggtttttaaaaggtttttgcgaaagcgtggattaactaaagtacgattattgaatttgtgcgtgatgatgataacaaaattaaga 23142407  T
Q  417 caatgaatatcaaatatgattcaaaggtgaattga 451  Q
    |||||||||||||||| ||||||||| ||||||||    
T  23142408 caatgaatatcaaataagattcaaagttgaattga 23142442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 336 - 453
Target Start/End: Original strand, 3462253 - 3462372
Alignment:
Q  336 ttttcaaaattttttgcgaaaacatggattaaaaagagtatgacta-ttgaatctgtgtttgatgatgataaaaaact-aagacaatgaatatcaaatat 433  Q
    |||||||||  |||||||||| | | |||||| ||||||||||||| ||| || ||||  |||||||||||| ||| | ||||||||||||||||||||     
T  3462253 ttttcaaaaggttttgcgaaagcgtagattaacaagagtatgactaattgcatttgtgcgtgatgatgataacaaaatcaagacaatgaatatcaaataa 3462352  T
Q  434 gattcaaaggtgaattgaga 453  Q
    |||| |||||||||||||||    
T  3462353 gatttaaaggtgaattgaga 3462372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 274 - 503
Target Start/End: Complemental strand, 17279294 - 17279071
Alignment:
Q  274 tgttagtctatatgacaaactataggaagttcgctagaggatgggatgaatagcgttttt-cgttttcaaaattttttgcgaaaacatggattaaaaaga 372  Q
    ||||||| ||||||||||||||  |||||| ||||||| |  ||| |||||| ||||||| | |||| ||||  |||| ||||| | ||||| |  || |    
T  17279294 tgttagtgtatatgacaaacta--ggaagtgcgctagatg--ggggtgaataacgttttttcatttttaaaaggttttacgaaagcttggataaccaaaa 17279199  T
Q  373 gtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattgaga-atttaaatatttaatct 470  Q
    ||||||||||||||| ||||| || ||||||||| |||| ||||||||||       |||||||||||||| ||||||||||  || ||||| | |||||    
T  17279198 gtatgactattgaatttgtgtgtgttgatgataacaaaattaagacaatg-----ttaatatgattcaaagctgaattgagaggttcaaataatgaatct 17279104  T
Q  471 tttagaacaaatcaacaatcaatataaatacat 503  Q
    | | || || |||||||||||||| ||||||||    
T  17279103 tatggagcatatcaacaatcaatacaaatacat 17279071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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