View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_low_10 (Length: 536)
Name: NF21014_low_10
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 17 - 524
Target Start/End: Original strand, 3332117 - 3332624
Alignment:
| Q |
17 |
aaccagaagcagcgggcggagcaggtggtggaagaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaacagccccaggagaagc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3332117 |
aaccagaagcagcgggcggagcaggtggtggaagaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaacagctccaggagaagc |
3332216 |
T |
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| Q |
117 |
cggttgccttagtgtcacgtttgtaaccgtccctgtcccactcatgatgcaaacgcctctttgacggcgtctagcaaagttgttgacactttcaacaacg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3332217 |
cggttgccttagtgtcacgtttgtaaccgtccctgtcccactcatgatgcaaacgcctctttgacggcgtctagcgaagttgttgacactttcaacaacg |
3332316 |
T |
|
| Q |
217 |
tcacaaccgtctgcaacttccatcacgtgagttttcaaggcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332317 |
tcacaaccgtctgcaacttccatcacgtgagttttcaaggcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctg |
3332416 |
T |
|
| Q |
317 |
gtcttcctcttggtcttcttgtcattgaatcggtgtcgccaccggaaccacctcctccggattctaacttggggctaaaatctgtgctgaacttgttgtt |
416 |
Q |
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| T |
3332417 |
gtcttcctcttggtcttcttgtcattgaatcggtgtcgccaccggaaccacctcctccggattctaacttggggctaaaatctgtgctgaacttgttgtt |
3332516 |
T |
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| Q |
417 |
gctgttttcttctcggtttgtgaggttgagtccaccgccgctgctacttccgctttgttcatcttgatctgtggtttgttgctgctgctgtaaagtgtgg |
516 |
Q |
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| T |
3332517 |
gctgttttcttctcggtttgtgaggttgagtccaccgccgctgctacttccgctttgttcatcttgatctgtggtttgttgctgctgctgtaaagtgtgg |
3332616 |
T |
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| Q |
517 |
aattgatg |
524 |
Q |
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| T |
3332617 |
aattgatg |
3332624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 13212814 - 13212894
Alignment:
| Q |
256 |
gcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtcttctt |
336 |
Q |
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| T |
13212814 |
gcgttcgcgctgtccctcgtgatgatgataggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttctt |
13212894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 32803230 - 32803278
Alignment:
| Q |
286 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
334 |
Q |
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| T |
32803230 |
ggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
32803278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 16578665 - 16578617
Alignment:
| Q |
286 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
334 |
Q |
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| T |
16578665 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
16578617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 32809703 - 32809738
Alignment:
| Q |
299 |
tgtttttggatccagctggtcttcctcttggtcttc |
334 |
Q |
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| T |
32809703 |
tgtttttggatccaggtggtcttcctcttggtcttc |
32809738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 46200964 - 46200911
Alignment:
| Q |
273 |
tgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctct |
326 |
Q |
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|||||||||||| |||||||||||||||||||| || |||| ||| | |||||| |
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| T |
46200964 |
tgtgatgataataggtggttttggtttgttttttgagccaggtggacgtcctct |
46200911 |
T |
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