View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_low_13 (Length: 452)
Name: NF21014_low_13
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 12 - 452
Target Start/End: Original strand, 25991510 - 25991948
Alignment:
| Q |
12 |
atgaagggaattttaaattgtgtgacagtgattatattgaccggcttatgcatgtacttcactttttcctctgtcttgtttaaactttatgtgtctgtag |
111 |
Q |
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| T |
25991510 |
atgaagggaattttaaattgtgtgacagtgattatattgaccggcttatgcatgtacttcactttttcctctgtctggtttaaactttatgtgtctgtag |
25991609 |
T |
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| Q |
112 |
tcatcgcttatttggttccggctacatatttcaacattcggccacaacccattcttcgagtttttaagatgtgattaaattgcacagctcaaatacttga |
211 |
Q |
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| T |
25991610 |
tcatcgcttatttggttccggctacatatttcaacattcggccacaacccattcttcgagtttttaagatgtgattaaattgcacagctcaaatacttga |
25991709 |
T |
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| Q |
212 |
atatatgaagagtttgagatttatgtccgattttagttgtaatattaacattgtaataatatctgttccgaagattgtttccttagtcctaatgttggag |
311 |
Q |
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| T |
25991710 |
atatatgatgagtttgagatttatgtctgattttagttgtagtattaacattgtaataatatctgttccgaagattgtttccttagccctaatgttggag |
25991809 |
T |
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| Q |
312 |
aatgtttcatcaaatgttgtgatttttgaatcatgcaaactgtatgagttcgaggttaagattagaaatattggttttgtctctctattatgctctacca |
411 |
Q |
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| T |
25991810 |
aatgttttatcaaatgttgtgatttttgaatcatgcaaactgtatgagttcgaggttaagactagaaatattgg--ttgtctctctattatgctctacga |
25991907 |
T |
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| Q |
412 |
tactccccaaccgccaaatatgaattagaaacagtcagagt |
452 |
Q |
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| T |
25991908 |
tactccccaaccgccaaatatgaattagaaacagtcagagt |
25991948 |
T |
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