View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_low_16 (Length: 413)
Name: NF21014_low_16
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 5390876 - 5390629
Alignment:
| Q |
17 |
agaatgaattgttgcacaccaagcttgaagaagttggagattggtggtttgcagattttatgttgagagtggagggtgtgttggatagtatgaacaaggc |
116 |
Q |
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| T |
5390876 |
agaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagattttatgtttagagtggagggtgtgttggatagtatgaacaagtc |
5390777 |
T |
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| Q |
117 |
taaggaacatggattcttgggatttaggaattctaagaattctttcattagttcgattgacaagactaaagtctacaagattgtgccatgatgatctgag |
216 |
Q |
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| T |
5390776 |
taaggaacatggattcttgggatttaggaattctaagaatgtgttcattagttggattgacaaaactaaagtgtacaagattgtgccatgatgatctgag |
5390677 |
T |
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| Q |
217 |
ctctggattgtttgaaataaagttcgcctggtggggtgggaagaacaa |
264 |
Q |
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| T |
5390676 |
ctctggattgtttgaaataaagttcccctggtggggtgggaagaacaa |
5390629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 5399595 - 5399404
Alignment:
| Q |
17 |
agaatgaattgttgcacaccaagcttgaagaagttggagattggtggtttgcagattttatgttgagagtggagggtgtgttggatagtatgaacaaggc |
116 |
Q |
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| T |
5399595 |
agaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagattttatgtttagagtggagggtgtgttggatagtatgaacaagtc |
5399496 |
T |
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| Q |
117 |
taaggaacatggattcttgggatttaggaattctaagaattctttcattagttcgattgacaagactaaagtctacaagattgtgccatgat |
208 |
Q |
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| T |
5399495 |
taaggaacatggattcttaggatttaggaattctaagaattcgttcattagttggattgataagacaaaagcttacaagattgtgccatgat |
5399404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 5394414 - 5394220
Alignment:
| Q |
17 |
agaatgaattgttgcacaccaagcttgaagaagttggagattggtggtttgcagattttatgttgagagtggagggtgtgttggatagtatgaacaaggc |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| || |
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| T |
5394414 |
agaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagattttagtttgagactggagggtgtgttggattctatgaacaaagc |
5394315 |
T |
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| Q |
117 |
taaggaacatggattcttgggatttaggaattctaagaattctttcattagttcgattgacaagactaaagtctacaagattgtgccatgatgat |
211 |
Q |
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| T |
5394314 |
taaggaacatggattcataggatttaggaattctaagaattcattcattagttggattgacaagacaaaagcttacaagattgtgccatgatgat |
5394220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 331 - 409
Target Start/End: Complemental strand, 5390557 - 5390479
Alignment:
| Q |
331 |
aaagaataatgttcacttgttggtaattttctaactttcactatttcttaattctcttaacttctttacatctctgctc |
409 |
Q |
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| T |
5390557 |
aaagaataatgttcacttgttggtaattttctaactttcactatttcttaattctcttaacttctttacacctctgctc |
5390479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 401
Target Start/End: Complemental strand, 5394118 - 5394051
Alignment:
| Q |
335 |
aataatgttcacttgtt-ggtaattttctaactttcactatttcttaattctcttaacttctttacat |
401 |
Q |
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| T |
5394118 |
aataatgttcacttgtttggtaatgttcacactttcgctatttcttaattctcttaacttcttcacat |
5394051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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