View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21014_low_17 (Length: 407)
Name: NF21014_low_17
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_low_17 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 12 - 399
Target Start/End: Original strand, 32175102 - 32175500
Alignment:
| Q |
12 |
tcatcaatcgcaagagtgttgaaactcattggatggttgaacttaacaggttcctgattccaacgaatggttccatcatagtcatcatattcaattgagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32175102 |
tcatcaatcgcaagagtgttgaaactcattggatggttgaacttaacaggttcctgattccaacgaatggttccatcatagtcatcatattcaattgagt |
32175201 |
T |
|
| Q |
112 |
gaatcttgattgccgtgtttccttgtttaatttgtttagctatctccatcacataaggaaaatatgaatcaatgatcttgtttttgtgtttattgtgaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32175202 |
gaatcttgattgccgtgtttccttgtttaatttgtttagctatctccatcacataaggaaaatatgaatcaatgatcttgtttttgtgtttattgtgaaa |
32175301 |
T |
|
| Q |
212 |
acttagctcatatgatcttaattctgacacggctgagtcattatcataacttcgaatccgcgaagagtccacttgtatgcaaattagtttccactttaca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32175302 |
acttagctcatatgatcttaattctgactcggctgagtcattatcataacttcgaatccgcgaagagtccacttgtatgcaaattagtttccactttaca |
32175401 |
T |
|
| Q |
312 |
ctaacacctccaaaaacatcactcacttcttca-----------cttgaatgcaatctctttatgatcctcagatttgcctaccttaactctctctgct |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
32175402 |
ctaacacctccaaaaacatcactcacttcttcatttctatcaatattgaatgcaatctctttatgatcctcagatttgcctaccttaactctttctgct |
32175500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 32119453 - 32119791
Alignment:
| Q |
12 |
tcatcaatcgcaagagtgttgaaactcattggatggttgaacttaacaggttcctgattccaacgaatggttccat-catagtcatcatattcaat---t |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | || || ||||||||||||||||| | | |
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|
| T |
32119453 |
tcatcaattgcaagagtgttgaaactcattggatggttgaacttaacaggttcgtgattccaaaca-tatttatattcatagtcatcatattcattattt |
32119551 |
T |
|
| Q |
108 |
gagtgaatcttgattgccgtgtttccttgtttaatttgtttagctatctccatcacataaggaaaatatgaatcaatgatcttgtttttgtgtttattgt |
207 |
Q |
| |
|
||| |||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| | |||||||| |||||||| |||| |
|
|
| T |
32119552 |
gagcgaatcttgattgccatgtttccttgtttcatttgattagctatctcaatcacataaggcaaatatgaatcgaaaatcttgttcttgtgtttcttgt |
32119651 |
T |
|
| Q |
208 |
gaaaacttagctcatatgatcttaattctgacacggctgagtcattatca---taacttcgaatccgcgaagagtccacttgtatgcaaattagtttcca |
304 |
Q |
| |
|
||||| |||||||||| ||||||| |||||||||||||||| | |||| ||||||||||||||||| ||| || |||||||||||||||||||| |
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|
| T |
32119652 |
gaaaagttagctcataggatcttatttctgacacggctgaggagtcatcactgtaacttcgaatccgcgacttgtctacctgtatgcaaattagtttcca |
32119751 |
T |
|
| Q |
305 |
ctttacactaacacctccaaaaacatcactcacttcttca |
344 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
32119752 |
ctttacactaataccttcaaaaacatcactcacttcttca |
32119791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 97 - 344
Target Start/End: Original strand, 32183205 - 32183455
Alignment:
| Q |
97 |
catattcaattgagtgaatcttgattgccgtgtttccttgtttaatttgtttagctatctccatcacataaggaaaatatgaatcaatgatcttgttttt |
196 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
32183205 |
catattcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgatcttgtcttt |
32183304 |
T |
|
| Q |
197 |
gtgtttattgtgaaaacttagctcatatgatcttaattctgacacggc---tgagtcattatcataacttcgaatccgcgaagagtccacttgtatgcaa |
293 |
Q |
| |
|
||| || ||||||||| | |||||||| ||||||| ||||||||| || ||||||| ||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
32183305 |
gtgcttcttgtgaaaagtcagctcataggatcttatttctgacacagccgaggagtcatcatcgtaacttcgaatccgcgaagagtccacttctatgcaa |
32183404 |
T |
|
| Q |
294 |
attagtttccactttacactaacacctccaaaaacatcactcacttcttca |
344 |
Q |
| |
|
|||||||||||||||||||||| |||| | ||||||||||||||||||||| |
|
|
| T |
32183405 |
attagtttccactttacactaataccttcgaaaacatcactcacttcttca |
32183455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 98 - 399
Target Start/End: Original strand, 32158905 - 32159220
Alignment:
| Q |
98 |
atattcaattgagtgaatcttgattgccgtgtttccttgtttaatttgtttagctatctccatcacataaggaaaatatgaatcaatgatcttgtttttg |
197 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| | ||||||||| ||| |
|
|
| T |
32158905 |
atattcatttgagtaaatcttgattgccatgtctccttgtttaatctgtttagctatctccatcacataaggcaaatatgaatcgaagatcttgttcttg |
32159004 |
T |
|
| Q |
198 |
tgtttattgtgaaaacttagctcatatgatcttaattctgacacggctgag---tcattatcataacttcgaatccgcgaagagtccacttgtatgcaaa |
294 |
Q |
| |
|
|| || ||||||||| |||||||||| ||||||| ||||||||||| |||| |||||||| ||| || ||| | || ||||| |||||||| || | |
|
|
| T |
32159005 |
tgcttcttgtgaaaagttagctcataggatcttatttctgacacgggtgaggagtcattatcgtaatgtctaattcttgatgagtcgacttgtatacata |
32159104 |
T |
|
| Q |
295 |
ttagtttccactttacactaacacctccaaaaacatcactcacttcttca-----------cttgaatgcaatctctttatgatcctcagatttgcctac |
383 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
32159105 |
ttagtttccactttacactaacaccttcaaaaacatcactcacttcttcatttctatcaatattgaatgcaagctctttatgatcctcagatttgcttac |
32159204 |
T |
|
| Q |
384 |
cttaactctctctgct |
399 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
32159205 |
cttaactctgtctgct |
32159220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 130 - 344
Target Start/End: Original strand, 32111531 - 32111748
Alignment:
| Q |
130 |
ttccttgtttaatttgtttagctatctccatcacataaggaaaatatgaatcaatgatcttgtttttgtgtttattgtgaaaacttagctcatatgatct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
32111531 |
ttccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaatgatcttgtttttgtgtttcttgtgaaaagttagctcatatgatct |
32111630 |
T |
|
| Q |
230 |
taattctgacac-ggc--tgagtcattatcataacttcgaatccgcgaagagtccacttgtatgcaaattagtttccactttacactaacacctccaaaa |
326 |
Q |
| |
|
|| ||||||||| ||| ||| | ||||| || ||||| | || ||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
32111631 |
tatttctgacacaggcgaggagcccctatcaaaatgtcgaactcttgatgagtcgacttgtatgcatattagtttccactttacactaacaccttcaaaa |
32111730 |
T |
|
| Q |
327 |
acatcactcacttcttca |
344 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
32111731 |
acatcactcacttcttca |
32111748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 12 - 345
Target Start/End: Complemental strand, 32205722 - 32205404
Alignment:
| Q |
12 |
tcatcaatcgcaagagtgttgaaactcattggatggttgaacttaacaggttcctgattccaacgaatggttccatcatagtcatcatattcaattgagt |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||| | | ||||||||| |||||| |
|
|
| T |
32205722 |
tcatcaattgcaagagtgttgaaactcattggatggttgaacttgacaggttcatgactccagcaac---------catagtcat---------ttgagt |
32205641 |
T |
|
| Q |
112 |
gaatcttgattgccgtgtttccttgtttaatttgtttagctatctccatcacataaggaaaatatgaatcaatgatcttgtttttgtgtttattgtgaaa |
211 |
Q |
| |
|
|||||||||| ||| ||||| ||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
32205640 |
gaatcttgatagccatgtttgcttctttaatttgtttagccatctccatcacataaggcaaatatgaatcgatgatcttgttcttgtgtttcttgtgaaa |
32205541 |
T |
|
| Q |
212 |
acttagctcatatgatcttaattctgacacggctgagtcat---tatcataacttcgaatccgcgaagagtccacttgtatgcaaattagtttccacttt |
308 |
Q |
| |
|
| |||| ||||| ||||| | |||||||| || |||| | | |||||| | |||||| || || || |||||||||| |||| |||||||||| |
|
|
| T |
32205540 |
agttagttcataggatctaatttctgacatggatgaggcgtacatatcattatgtcgaattcgtgatccatcttcttgtatgcatattaatttccacttt |
32205441 |
T |
|
| Q |
309 |
acactaacacctccaaaaacatcactcacttcttcac |
345 |
Q |
| |
|
|| |||| |||| ||||| |||||||||||||||||| |
|
|
| T |
32205440 |
actctaataccttcaaaatcatcactcacttcttcac |
32205404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 101 - 345
Target Start/End: Complemental strand, 32211372 - 32211125
Alignment:
| Q |
101 |
ttcaattgagtgaatcttgattgccgtgtttccttgtttaatttgtttagctatctccatcacataaggaaaatatgaatcaatgatcttgtttttgtgt |
200 |
Q |
| |
|
|||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| |||| |||||| |
|
|
| T |
32211372 |
ttcagttgagagaatcttgatagccatgtttccttgtttaatttgtttagctatctccatcacataagggaaatatgaatcgaagatcgtgttcttgtgt |
32211273 |
T |
|
| Q |
201 |
ttattgtgaaaacttagctcatatgatcttaattctgacacggctga---gtcattatcataacttcgaatccgcgaagagtccacttgtatgcaaatta |
297 |
Q |
| |
|
|| ||||||||| |||| ||||| ||||| | ||||||||||| ||| || |||||| | |||||| || || || |||||||||| |||| |
|
|
| T |
32211272 |
ttcttgtgaaaagttagttcataggatctaatttctgacacggatgaggtgtacatatcattatgtcgaattcgtgatccatcttcttgtatgcatatta |
32211173 |
T |
|
| Q |
298 |
gtttccactttacactaacacctccaaaaacatcactcacttcttcac |
345 |
Q |
| |
|
|||||||||||| ||| |||| ||||| |||||||||||||||||| |
|
|
| T |
32211172 |
atttccactttactgtaataccttcaaaatcatcactcacttcttcac |
32211125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 276 - 394
Target Start/End: Original strand, 32178495 - 32178625
Alignment:
| Q |
276 |
gagtccacttgtatgcaaattagtttccactttacactaacacc-tccaaaaacatcactcacttcttca-----------cttgaatgcaatctcttta |
363 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
32178495 |
gagtcgacttgtatacatattagtttccactttacactaacaccttcaaaaaacatcactcacttcttcatttctatcaatattgaatgcactctcttta |
32178594 |
T |
|
| Q |
364 |
tgatcctcagatttgcctaccttaactctct |
394 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
32178595 |
tgatcctcagatttgcgtaccttaactctct |
32178625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 32211441 - 32211391
Alignment:
| Q |
14 |
atcaatcgcaagagtgttgaaactcattggatggttgaacttaacaggttc |
64 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32211441 |
atcaattgcaagagtgttgaaactcattggatggttgaacttgacaggttc |
32211391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 32111431 - 32111476
Alignment:
| Q |
12 |
tcatcaatcgcaagagtgttgaaactcattggatggttgaacttaa |
57 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32111431 |
tcatcaattgcaagagtggtgaaactcattggatggttgaacttaa |
32111476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 32157425 - 32157469
Alignment:
| Q |
12 |
tcatcaatcgcaagagtgttgaaactcattggatggttgaactta |
56 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32157425 |
tcatcaattgcaagagtgttgaaagtcattggatggttgaactta |
32157469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 32183141 - 32183184
Alignment:
| Q |
12 |
tcatcaatcgcaagagtgttgaaactcattggatggttgaactt |
55 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
32183141 |
tcatcaattgcaagagtgttgaaactcattggatgattgaactt |
32183184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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