View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_low_25 (Length: 352)
Name: NF21014_low_25
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_low_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 38831621 - 38831287
Alignment:
| Q |
18 |
gctagcagtggcaccattgagtagcataagagatgaaagccaaagagaaatggaggagaatttatcaattgagacatgtgactttgctgatctttccgaa |
117 |
Q |
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| T |
38831621 |
gctagcagtggcaccattgagtagcataagagatgaaagccaaagagaaatggaggagaatttatcaattgagacatgtgactttgctgatctttccgaa |
38831522 |
T |
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| Q |
118 |
ggaaacttattggaaagcatcaatttcgaattcgatgatgatttcttcgtatgtttcaacgacggagatgtgttaccggatcttgagatggacccggaaa |
217 |
Q |
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| T |
38831521 |
gggaacttattggaaagcatcaatttcgaattcgatgatgatttcttcgtatgcttcaacgacggagatgtgttaccggatcttgagatggacccggaaa |
38831422 |
T |
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| Q |
218 |
tgcttgctgaattctccctcagcagcagcggtgaggaatcggatataaattcgtcgggtgcaaatagcaaatcttgtaatgatgggaacatggttagtat |
317 |
Q |
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| T |
38831421 |
tgcttgctgaattctccctcagcagcagcggtgaggaatcggatataaattcgtcgggtgcaaatagcaaatcttgtaatgatgggaatatggttagtat |
38831322 |
T |
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| Q |
318 |
tgagagaaaattacaagatgaagagaaagtagttt |
352 |
Q |
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| T |
38831321 |
tgagagaaaattacaagatgaagagaaagtagttt |
38831287 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 30463872 - 30463923
Alignment:
| Q |
95 |
gtgactttgctgatctttccgaaggaaacttattggaaagcatcaatttcga |
146 |
Q |
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| T |
30463872 |
gtgactttggcgacctttccgaaggaaatttattggaaagcatcaacttcga |
30463923 |
T |
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