View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_low_29 (Length: 325)
Name: NF21014_low_29
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 11668461 - 11668255
Alignment:
| Q |
1 |
ccttttctgtagctcattaaccaacgaattacaatcttcaggattacatgtaagttaacctttggtttaacattaaatcttctagagtaaaatgcttcta |
100 |
Q |
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| T |
11668461 |
ccttttctgtagctcattaaccaatgaattacaatcttcaggattacatgtaagttaacctttggtttaacattaaatcttctagaataaaatgcttcta |
11668362 |
T |
|
| Q |
101 |
atcctcccacagtatcaattatgtagagttgttacatatacctttcaatttctgtaacacacaatcattatttatgtgcttttgttcccaactgtttctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11668361 |
atcctcccacagtatcaattatgtagagttgttacatatacctttcaatttctgtaacacacaatcattatttatgtgctttcgttcccaactgtttctc |
11668262 |
T |
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| Q |
201 |
caaaatc |
207 |
Q |
| |
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||||||| |
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| T |
11668261 |
caaaatc |
11668255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 201 - 325
Target Start/End: Original strand, 11668127 - 11668251
Alignment:
| Q |
201 |
caaaatcagttttccctttttcaatatgtaacactttattaagatgttaatgcagatgatgatgagttaaagccatcggaatcaagtatgtataaatatg |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11668127 |
caaaatcagttttccccttttcaatatgtaacactttattaagatgttaatgcagatgatgatgagttaaagccatcggaatcaagtatgtataaatatg |
11668226 |
T |
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| Q |
301 |
cagcctttgatttagaggaaaggta |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
11668227 |
cagcctttgatttagaggaaaggta |
11668251 |
T |
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