View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_low_30 (Length: 322)
Name: NF21014_low_30
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 26227582 - 26227411
Alignment:
| Q |
1 |
atgacgtcattctcctaagaatacatgaagtattttcaaaatttccaattttcgtcttcatattttttctagtcgaaaatgacatttttaggtgcaattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26227582 |
atgacgtcattctcctaagaatacatgaagtattttcaaaaatgccaatttttgtcttcatattttttctagtcgaaaatgacatttttaggagcaattt |
26227483 |
T |
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| Q |
101 |
gttggcctgtaatttttgggaggtaatttgttagccctacttccactttttaattcacataacattaatttt |
172 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| |
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| T |
26227482 |
gttggcctataatttttgggaggtaatttgttagctctacttccactttttaattcacgtaacattagtttt |
26227411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 26227175 - 26227094
Alignment:
| Q |
227 |
tgaataagaaagggaagagtttccttcaaaaaacaaaagggaagnnnnnnnncaacaattaaataccatttatcgtgttcat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26227175 |
tgaataagaaagggaagagtttccttcaaaaaacaaaagggaagttttttttcaacaattaaataccatttatcgtgttcat |
26227094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 26227291 - 26227238
Alignment:
| Q |
175 |
ctatgtttaatttaaccttaaaatattgcatacccggtcatccaaggccatatg |
228 |
Q |
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| T |
26227291 |
ctatgtttaatttaaccttaaaatattgcatacccggtcatccaaggccatatg |
26227238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 15926822 - 15926865
Alignment:
| Q |
72 |
gtcgaaaatgacatttttaggtgcaatttgttggcctgtaattt |
115 |
Q |
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| T |
15926822 |
gtcgaaaatgacatttttgggggcattttgttggcctgtaattt |
15926865 |
T |
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