View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_low_35 (Length: 302)
Name: NF21014_low_35
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 81 - 286
Target Start/End: Complemental strand, 6163865 - 6163668
Alignment:
| Q |
81 |
tttcaagttttaataaaaatgagagagctaaagttgtgaatggagaaaaactttgaatcaaatgttttaagttttaaataatacaaccacaatatttgaa |
180 |
Q |
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| T |
6163865 |
tttcaaatttcaataaaaatgagagagctaaagttgtgaatggagaaaaactttgaat-----gttttaagttttaaataatataaccacgatatttgaa |
6163771 |
T |
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| Q |
181 |
catcatannnnnnnnaggttcattcaaggctccttttaatctttatctctatattcctatcacatgaccaaacctattacattatcacatcaatctattt |
280 |
Q |
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| T |
6163770 |
tattatattttttt-aggttcattcaacgccccttttaatttttatct--atattcctatcacatgatcaaacctattacattatcacatcaatctattt |
6163674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6164056 - 6163984
Alignment:
| Q |
1 |
caagtgtcgacttaattaagatgtcatatattcacgtatatgcttttgcaccttactagtctttctataaaac |
73 |
Q |
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| T |
6164056 |
caagtgtcgacttaattaagatgtcatatattcacgtatatgcttttgcaccttactagtctttctataaaac |
6163984 |
T |
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