View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_low_49 (Length: 249)
Name: NF21014_low_49
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 38831288 - 38831072
Alignment:
| Q |
1 |
ttattcttcagattcaagttcgagtcgtgtggaagagataattagcaaaagagatgaatccgttgtgccgaatccattgcctaaggaaggtgagaaagga |
100 |
Q |
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| T |
38831288 |
ttattcttcagattcaagttcgagtcgtgtggaagagataattagcaaaagagatgaatccgttgtgccgaatccattgcctaaggaaggtgagaaagga |
38831189 |
T |
|
| Q |
101 |
agaaaatcatcatctcaatcaaagaataatcctcatgggaagagaaaagttaaggtgagttactatatatataattgctatttaatttggtatatgtttg |
200 |
Q |
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| T |
38831188 |
agaaaatcatcatctcaatcaaagaataatcctcatgggaagagaaaagtgaaggtgag-----------ataattgctatttaatttggtatatgtttg |
38831100 |
T |
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| Q |
201 |
ttaattagttacaaacccttttacttaa |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38831099 |
ttaattagttacaaacccttttacttaa |
38831072 |
T |
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