View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21014_low_5 (Length: 638)

Name: NF21014_low_5
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21014_low_5
NF21014_low_5
[»] chr5 (17 HSPs)
chr5 (15-374)||(1052870-1053225)
chr5 (476-626)||(1052199-1052350)
chr5 (188-374)||(1046210-1046396)
chr5 (193-374)||(1065270-1065451)
chr5 (193-374)||(1071009-1071190)
chr5 (193-286)||(1033360-1033453)
chr5 (193-288)||(1043750-1043845)
chr5 (576-626)||(1032876-1032926)
chr5 (193-362)||(1058218-1058387)
chr5 (460-617)||(1045975-1046130)
chr5 (589-635)||(1043275-1043321)
chr5 (193-254)||(1641080-1641141)
chr5 (589-635)||(1049579-1049625)
chr5 (589-623)||(1065046-1065080)
chr5 (581-626)||(1058007-1058052)
chr5 (581-626)||(1070347-1070392)
chr5 (279-363)||(1050993-1051077)


Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 374
Target Start/End: Complemental strand, 1053225 - 1052870
Alignment:
Q  15 aaaatgtcctcctattatagtaagttaaactaaagagtaaaattcaaagtaggaaaaatgttagagatgtcatacgtacctttgtaacaatttttatctc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    |||||||||||||||||||||    
T  1053225 aaaatgtcctcctattatagtaagttaaactaaagagtaaaattcaaagtagaaaaaatgttagagatgtcatac----ctttgtaacaatttttatctc 1053130  T
Q  115 tctaatttacgtcattatttctgttcatacttttaaattgaatcaattgaactatggagaaatttaagaaaaatgaatttaccagcttcaatagcatttc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1053129 tctaatttacgtcattatttctgttcatacttttaaattgaatcaattgaactatggagaaatttaagaaaaatgaatttaccagcttcaatagcatttc 1053030  T
Q  215 ttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttaacctcctcggttgtgtgaattgtggcatttgaaaaccatcacctccaat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1053029 ttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttagcctcctcggttgtgtgaattgtggcatttgaaaaccatcacctccaat 1052930  T
Q  315 ttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac 374  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1052929 ttgtggtgtgagtagtttgtttgttgaagatattggtgcttgcccatttggttgacaaac 1052870  T

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Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 476 - 626
Target Start/End: Complemental strand, 1052350 - 1052199
Alignment:
Q  476 tataaaataagtatcatctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgt-tattaattgctcatttgataaaa 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||    
T  1052350 tataaaataagtatcatctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgtcaattaattgctcattagataaaa 1052251  T
Q  575 ttaaatacatactagaattagaaactcttccaacatgccaaatctgacagaa 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1052250 ttaaatacatactagaattagaaactcttccaacatgccaaatctgacagaa 1052199  T

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Target: chr5; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 188 - 374
Target Start/End: Complemental strand, 1046396 - 1046210
Alignment:
Q  188 tgaatttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttaacctcctcggttgtgtgaattg 287  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||    
T  1046396 tgaagttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgatcttagcctccttggtggtgtgaattg 1046297  T
Q  288 tggcatttgaaaaccatcacctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac 374  Q
    ||  |||| || |||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  1046296 tgatatttcaataccattgcctccaattcgtggtgtgagtagtttgtctgtagaagatattggtgcttgtccatttggttgataaac 1046210  T

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Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 193 - 374
Target Start/End: Complemental strand, 1065451 - 1065270
Alignment:
Q  193 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttaacctcctcggttgtgtgaattgtggca 292  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||| ||  || ||  ||||||||| ||  |    
T  1065451 ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaatgttaggaatttcatctgtccttagccgtctaggcggtgtgaattttgcaa 1065352  T
Q  293 tttgaaaaccatcacctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac 374  Q
    | | |||||||| || || ||||||||||||||||   |||||||| || ||||||||||| || |||||||| ||| ||||    
T  1065351 tattaaaaccattacttcgaatttgtggtgtgagtgacttgtctgtagatgatattggtgcctgtccatttggctgaaaaac 1065270  T

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Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 193 - 374
Target Start/End: Complemental strand, 1071190 - 1071009
Alignment:
Q  193 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttaacctcctcggttgtgtgaattgtggca 292  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||| ||||| |||| || ||| ||| ||||||||| ||  |    
T  1071190 ttaccagcttcaatagcatttcttgcagcgagtctgaagtcattgacaatgtttggaatttcatctgtccttagccgccttggtggtgtgaattttgcaa 1071091  T
Q  293 tttgaaaaccatcacctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac 374  Q
      | || ||||| || || |||||||||| | ||| | |||||||| |||||||||||||||||||||||||| ||| ||||    
T  1071090 catcaataccattacttcgaatttgtggttttagtggcttgtctgtagaagatattggtgcttgcccatttggctgataaac 1071009  T

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Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 1033453 - 1033360
Alignment:
Q  193 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttaacctcctcggttgtgtgaatt 286  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| |||| ||| |||||| ||| |||||    
T  1033453 ttaccagcttcaatagcatttcttgcagcgagtctgaagtcatttacaatattaggaatttcatctgtccttagccttctcggtggtgagaatt 1033360  T

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Target: chr5; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 193 - 288
Target Start/End: Complemental strand, 1043845 - 1043750
Alignment:
Q  193 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttaacctcctcggttgtgtgaattgt 288  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||| |||| ||  |||||||  |||||||||    
T  1043845 ttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatctgtgcttagccgtctcggtttcgtgaattgt 1043750  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 576 - 626
Target Start/End: Complemental strand, 1032926 - 1032876
Alignment:
Q  576 taaatacatactagaattagaaactcttccaacatgccaaatctgacagaa 626  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1032926 taaatacatactagaattagaaactcttccaacatgccaaatctgacagaa 1032876  T

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Target: chr5; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 193 - 362
Target Start/End: Complemental strand, 1058387 - 1058218
Alignment:
Q  193 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttaacctcctcggttgtgtgaattgtggca 292  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||| ||| | |||| ||  || ||  ||||||||| ||  |    
T  1058387 ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaattctgcga 1058288  T
Q  293 tttgaaaaccatcacctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatt 362  Q
      | || ||||| || || || ||||||||||||| | |||||||| | |||||||||||| || |||||    
T  1058287 catcaataccattacttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccatt 1058218  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 617
Target Start/End: Complemental strand, 1046130 - 1045975
Alignment:
Q  460 taattaaactagtgaatataaaataagtatcat-ctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgtta-ttaa 557  Q
    |||||||||||||||| |||||  || |||||| || |||||||||||  ||||| ||||||||  |||||| ||||||| | |||||| ||||| ||||    
T  1046130 taattaaactagtgaacataaatcaa-tatcattctgtaacaaaaattcaattcctacctaaaaa-aatact-gaaaaatca-aaaaatttgttagttaa 1046035  T
Q  558 ttgctcatttgataaaattaaatacatactagaattagaaactcttccaacatgccaaat 617  Q
    ||||| ||||||| ||| ||||| ||||| |||||||||||| || |||||| |||||||    
T  1046034 ttgctaatttgattaaactaaatgcataccagaattagaaaccctaccaacaagccaaat 1045975  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 589 - 635
Target Start/End: Complemental strand, 1043321 - 1043275
Alignment:
Q  589 gaattagaaactcttccaacatgccaaatctgacagaataatctacc 635  Q
    ||||| |||||||||||||||||||||||||||||||| ||| ||||    
T  1043321 gaatttgaaactcttccaacatgccaaatctgacagaaaaatatacc 1043275  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 1641080 - 1641141
Alignment:
Q  193 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttc 254  Q
    ||||||||| | |||||||| |||||||||||||| ||||||||||| |||  |||||||||    
T  1641080 ttaccagctgctatagcattccttgcagcaagtctgaagtcattgacgatacgaggaatttc 1641141  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 635
Target Start/End: Complemental strand, 1049625 - 1049579
Alignment:
Q  589 gaattagaaactcttccaacatgccaaatctgacagaataatctacc 635  Q
    ||||| ||||||||||||||||||||||| |||||||| ||| ||||    
T  1049625 gaatttgaaactcttccaacatgccaaatttgacagaaaaatatacc 1049579  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 623
Target Start/End: Complemental strand, 1065080 - 1065046
Alignment:
Q  589 gaattagaaactcttccaacatgccaaatctgaca 623  Q
    |||| ||||||||||||||||||||||||||||||    
T  1065080 gaatcagaaactcttccaacatgccaaatctgaca 1065046  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 626
Target Start/End: Complemental strand, 1058052 - 1058007
Alignment:
Q  581 acatactagaattagaaactcttccaacatgccaaatctgacagaa 626  Q
    |||||| || || ||||||||||||||| |||||||||||||||||    
T  1058052 acataccagtatcagaaactcttccaacgtgccaaatctgacagaa 1058007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 626
Target Start/End: Complemental strand, 1070392 - 1070347
Alignment:
Q  581 acatactagaattagaaactcttccaacatgccaaatctgacagaa 626  Q
    |||||| || || |||||||||||||||||||||||| ||||||||    
T  1070392 acataccagtatcagaaactcttccaacatgccaaatttgacagaa 1070347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 1051077 - 1050993
Alignment:
Q  279 tgtgaattgtggcatttgaaaaccatcacctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccattt 363  Q
    |||||||||||  |||| || | |||||||||||||||||||||| ||||| |||  ||  |||||| ||||| |||| ||||||    
T  1051077 tgtgaattgtgatatttcaacagcatcacctccaatttgtggtgtaagtagcttgcttgcagaagatgttggttcttgtccattt 1050993  T

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