View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_low_51 (Length: 233)
Name: NF21014_low_51
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_low_51 |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: scaffold0328 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 12895 - 12680
Alignment:
| Q |
1 |
gatttttgctcaatcctagagcactttctaattacaagagatcaaaaaccatgaacattgagtacaattttaaaggtgaaggtgaaataaagggtggact |
100 |
Q |
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| T |
12895 |
gatttttgctcaatcctagagcactttctaattacaagagatcaaaaaccatgaacattgagtacaattttaaaggtgaaggtgaaataaagggtggact |
12796 |
T |
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| Q |
101 |
ctttataatagggaggggaaagagtggcattgcttatcagtttattgagagaaattttggtgattgggccccactggctgaagttattgaaatctgtact |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
12795 |
ctttataatagggaatggaaagagtggcattgcttatcagtttattgagagaaattttggtgattgggcaccagtggctgaagttattgaaatctgtact |
12696 |
T |
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| Q |
201 |
caaatgcagaaggtaa |
216 |
Q |
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|||||||||||||||| |
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| T |
12695 |
caaatgcagaaggtaa |
12680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 27336553 - 27336450
Alignment:
| Q |
69 |
tttaaaggtgaaggtgaaataaagggtggactctttataatagggaggggaaagagtggcattgcttatcagtttattgagagaaattttggtgattggg |
168 |
Q |
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|||| ||| ||||| |||||||||||||||||||| ||| ||||||| |||| || |||||||||||| || |||||||||| || ||||||||||||| |
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| T |
27336553 |
tttagaggggaaggagaaataaagggtggactcttcatagtagggagtggaaggactggcattgcttaccaatttattgagatgaactttggtgattggg |
27336454 |
T |
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| Q |
169 |
cccc |
172 |
Q |
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|||| |
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| T |
27336453 |
cccc |
27336450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 29177218 - 29177321
Alignment:
| Q |
69 |
tttaaaggtgaaggtgaaataaagggtggactctttataatagggaggggaaagagtggcattgcttatcagtttattgagagaaattttggtgattggg |
168 |
Q |
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|||| ||| ||||| |||||||||||||||||||| ||| ||||||| |||| || |||||||||||| || |||||||||| || ||||||||||||| |
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| T |
29177218 |
tttagaggggaaggagaaataaagggtggactcttcatagtagggagtggaaggactggcattgcttaccaatttattgagatgaactttggtgattggg |
29177317 |
T |
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| Q |
169 |
cccc |
172 |
Q |
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|||| |
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| T |
29177318 |
cccc |
29177321 |
T |
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