View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21014_low_52 (Length: 231)

Name: NF21014_low_52
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21014_low_52
NF21014_low_52
[»] chr4 (3 HSPs)
chr4 (4-221)||(9803347-9803564)
chr4 (83-206)||(12215497-12215621)
chr4 (78-149)||(13206710-13206782)
[»] chr1 (3 HSPs)
chr1 (5-216)||(17617309-17617520)
chr1 (29-116)||(15929791-15929878)
chr1 (85-149)||(16258752-16258817)
[»] chr3 (2 HSPs)
chr3 (7-193)||(16995034-16995214)
chr3 (23-208)||(3792087-3792272)
[»] chr2 (4 HSPs)
chr2 (18-120)||(29529460-29529562)
chr2 (47-216)||(21690203-21690371)
chr2 (142-206)||(34150595-34150660)
chr2 (79-215)||(39527023-39527160)
[»] chr5 (3 HSPs)
chr5 (127-216)||(16811768-16811857)
chr5 (85-149)||(16008057-16008121)
chr5 (47-179)||(17034105-17034237)
[»] chr7 (2 HSPs)
chr7 (87-205)||(8804287-8804404)
chr7 (85-151)||(17887804-17887871)
[»] chr8 (2 HSPs)
chr8 (52-150)||(11222217-11222315)
chr8 (173-207)||(13909741-13909775)
[»] scaffold0267 (1 HSPs)
scaffold0267 (52-117)||(5671-5736)
[»] chr6 (1 HSPs)
chr6 (181-218)||(24469851-24469888)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 9803564 - 9803347
Alignment:
Q  4 tgtcttgtttgtctaattacatgacttatcaataaaatattcgaaacgcctatgaaattttatggtttaaagatgaaaaataattacatgactcaattga 103  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||    
T  9803564 tgtcttgtttgtcgaattacatgagttatcaataaaatattcaaaacgcctataaaaatttatggtttaaaggtgaaaaataattacatgactcaattga 9803465  T
Q  104 aaacaatacaaaatatccctcacaccatgtgcaatttctctaaaactcttcgatagtgactcaattgtgtactaaactgattcaaaaacatactaaaaat 203  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  9803464 aaacaatataaaatatccctcataccatgtgcaatttctctaaaactcttcgatagtaactcaattatctactaaactgattcaaaaacatactaaaaat 9803365  T
Q  204 aacgtaacatgacctatg 221  Q
    ||||||||||||||||||    
T  9803364 aacgtaacatgacctatg 9803347  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 12215621 - 12215497
Alignment:
Q  83 ataattacatgactcaat-tgaaaacaatacaaaatatccctcacaccatgtgcaatttctctaaaactcttcgatagtgactcaattgtgtactaaact 181  Q
    ||||||||||||||| || ||||||||||||||||| ||||| | |  ||| |||| ||||||||||||| ||  || |||||||| | | ||||||| |    
T  12215621 ataattacatgactcgatatgaaaacaatacaaaatttcccttaaataatgagcaaattctctaaaactcctctttattgactcaaatctatactaaaat 12215522  T
Q  182 gattcaaaaacatactaaaaataac 206  Q
    ||||  |||||||||| ||||||||    
T  12215521 gattgtaaaacatacttaaaataac 12215497  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 13206710 - 13206782
Alignment:
Q  78 gaaaaataattacatg-actcaattgaaaacaatacaaaatatccctcacaccatgtgcaatttctctaaaac 149  Q
    |||| ||||||||||| |||||| ||||||||||||||||| ||||| | ||||| ||||| | |||||||||    
T  13206710 gaaatataattacatggactcaaatgaaaacaatacaaaatgtcccttaaaccatatgcaactcctctaaaac 13206782  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 17617520 - 17617309
Alignment:
Q  5 gtcttgtttgtctaattacatgacttatcaataaaatattcgaaacgcctatgaaattttatggtttaaagatgaaaaataattacatgactcaattgaa 104  Q
    |||||| ||| | |||||||||  |||||||||||| | || |||  ||||||||||| |||||||||   | |||| | ||||||||||||||||||||    
T  17617520 gtcttgcttgccgaattacatggtttatcaataaaagactcaaaaaacctatgaaattgtatggtttaggaaagaaacaaaattacatgactcaattgaa 17617421  T
Q  105 aacaatacaaaatatccctcacaccatgtgcaatttctctaaaactcttcgatagtgactcaattgtgtactaaactgattcaaaaacatactaaaaata 204  Q
    |||||||| |||   |||| | |||||| | || ||||||||||||| || ||| ||||| |||||| ||||||||| | | ||||||||| | ||||||    
T  17617420 aacaatactaaaaggcccttaaaccatgagaaaattctctaaaactcctctataatgactaaattgtctactaaacttactaaaaaacatattgaaaata 17617321  T
Q  205 acgtaacatgac 216  Q
    |||||| |||||    
T  17617320 acgtaagatgac 17617309  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 15929878 - 15929791
Alignment:
Q  29 ttatcaataaaatattcgaaacgcctatgaaattttatggtttaaagatgaaaaataattacatgactcaattgaaaacaatacaaaa 116  Q
    |||||||||||| | || |||| | ||||||| | | |||||||| || |||| | ||||||||||||||||||||||||||||||||    
T  15929878 ttatcaataaaagactcaaaacacttatgaaactatttggtttaaggaagaaacaaaattacatgactcaattgaaaacaatacaaaa 15929791  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 16258752 - 16258817
Alignment:
Q  85 aattacatgactcaat-tgaaaacaatacaaaatatccctcacaccatgtgcaatttctctaaaac 149  Q
    |||||||||||||||| |||||||| |||||||||||||| | | ||| |||||||  ||||||||    
T  16258752 aattacatgactcaatgtgaaaacattacaaaatatcccttaaatcatatgcaattgttctaaaac 16258817  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 16995214 - 16995034
Alignment:
Q  7 cttgtttgtctaattacatgacttatcaataaaatattcgaaacgcctatgaaattttatggtttaaagatgaaaaataattacatgactcaattgaaaa 106  Q
    |||||||||| |||||||||| || ||||||||| |     ||| | ||||||||| | |||||||  || |||| |||||| |||| ||||||||||||    
T  16995214 cttgtttgtcaaattacatgatttttcaataaaaaac----aacacatatgaaattgtgtggtttatggaagaaacataattccatggctcaattgaaaa 16995119  T
Q  107 caatacaaaatatccctcacaccatgtgcaatttctctaaaactcttcgatagtgactcaattgtgtactaaactgattcaaaaaca 193  Q
    ||||| ||||| || || | ||||  ||||||||||||| ||||| |  ||| |||||||||||| || |||||| | |||||||||    
T  16995118 caatataaaatgtctcttaaacca--tgcaatttctctataactcctttataatgactcaattgtctaataaactaactcaaaaaca 16995034  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 3792272 - 3792087
Alignment:
Q  23 catgacttatcaataaaatattcgaaacgcctatgaaattttatggtttaaagatgaaaaataattacatgactcaattgaaaacaatacaaaatatccc 122  Q
    ||||| || ||||||||| | || || | ||||||||||| ||| |||||  || |||| ||||||| ||||||||||| ||||| ||||||||| || |    
T  3792272 catgatttgtcaataaaagactcaaaccacctatgaaattatatagtttagggaagaaacataattatatgactcaatttaaaacgatacaaaatgtctc 3792173  T
Q  123 tcacaccatgtgcaatttctctaaaactcttcgatagtgactcaa-ttgtgtactaaactgattcaaaaacatactaaaaataacgt 208  Q
    | | ||||||  |||||||||||||| || || ||| | | | || |||| ||||||||| | |||||| |||||| ||||||||||    
T  3792172 ttaaaccatgaacaatttctctaaaattc-tctataataatttaatttgtctactaaactaactcaaaatcatactgaaaataacgt 3792087  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 29529460 - 29529562
Alignment:
Q  18 aattacatgacttatcaataaaatattcgaaacgcctatgaaattttatggtttaaagatgaaaaataattacatgactcaattgaaaacaatacaaaat 117  Q
    |||||||||| || ||||||||| | |||||||   ||||||||| | |||||||  || |||| ||||||||||||||||||| |||||||| ||||||    
T  29529460 aattacatgatttttcaataaaagactcgaaacatgtatgaaattgtctggtttagggaagaaacataattacatgactcaattaaaaacaatgcaaaat 29529559  T
Q  118 atc 120  Q
    |||    
T  29529560 atc 29529562  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 216
Target Start/End: Original strand, 21690203 - 21690371
Alignment:
Q  47 aaacgcctatgaaattttatggtttaaagatgaaaaataattacatgactcaattgaaaacaatacaaaatatccctcacaccatgtgcaatttctctaa 146  Q
    |||| ||||||||||| |||||||||  || |||| | ||||||| |||||| ||| |||||||||||||| ||| | | ||||||   || ||||||||    
T  21690203 aaacacctatgaaattgtatggtttagggaagaaacaaaattacaagactcagttg-aaacaatacaaaatttccattaaaccatgaataacttctctaa 21690301  T
Q  147 aactcttcgatagtgactcaattgtgtactaaactgattcaaaaacatactaaaaataacgtaacatgac 216  Q
    ||||| || | | | | || ||||| || |||||||| || ||  |||||| |||||||||||| |||||    
T  21690302 aactcctctacaattattccattgtctaataaactgactcgaaggcatacttaaaataacgtaagatgac 21690371  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 34150660 - 34150595
Alignment:
Q  142 tctaaaactcttcgatagtgact-caattgtgtactaaactgattcaaaaacatactaaaaataac 206  Q
    |||||||||| || ||| ||||| ||||||| ||| ||||||| ||||||||||||||||||||||    
T  34150660 tctaaaactcctctataatgactacaattgtctaccaaactgactcaaaaacatactaaaaataac 34150595  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 39527023 - 39527160
Alignment:
Q  79 aaaaataattacatgactcaattgaaaacaatacaaaatatccctcacaccatgtgcaatttctctaaaactcttcgatagtgac-tcaattgtgtacta 177  Q
    ||||| |||| || ||||||||||||||||||||||| | ||||| | || ||| | || || |||||||||| ||  || |||| || | ||| |||||    
T  39527023 aaaaaaaattgcacgactcaattgaaaacaatacaaagtgtcccttaaactatgagaaacttttctaaaactcctcattaatgacttctaatgtctacta 39527122  T
Q  178 aactgattcaaaaacatactaaaaataacgtaacatga 215  Q
    |||||| || |||||||| || |||||| |||| ||||    
T  39527123 aactgactctaaaacatagtagaaataatgtaagatga 39527160  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 16811768 - 16811857
Alignment:
Q  127 accatgtgcaatttctctaaaactcttcgatagtgactcaattgtgtactaaactgattcaaaaacatactaaaaataacgtaacatgac 216  Q
    |||||| ||||||||||||||| || || ||| |||||||| ||| || |||| ||||| ||| ||||||||||||||| |||| |||||    
T  16811768 accatgagcaatttctctaaaaatcctctataatgactcaaatgtctaataaaatgattaaaatacatactaaaaataatgtaagatgac 16811857  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 16008121 - 16008057
Alignment:
Q  85 aattacatgactcaattgaaaacaatacaaaatatccctcacaccatgtgcaatttctctaaaac 149  Q
    |||||||||||||||||||||| | || ||||||||||||| || ||| |||| |||||||||||    
T  16008121 aattacatgactcaattgaaaaaattataaaatatccctcaaactatgagcaacttctctaaaac 16008057  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 17034105 - 17034237
Alignment:
Q  47 aaacgcctatgaaattttatggtttaaagatgaaaaataattacatgactcaattgaaaacaatacaaaatatccctcacaccatgtgcaatttctctaa 146  Q
    |||| ||||| ||||| | |||||||| || ||||  |||||| |||| ||||||| ||| |||||||||| ||||| | ||||||   || || |||||    
T  17034105 aaacacctataaaattgtctggtttaaggaagaaacgtaattatatgaatcaattgtaaaaaatacaaaatgtcccttaaaccatgattaacttatctaa 17034204  T
Q  147 aactcttcgatagtgactcaattgtgtactaaa 179  Q
    || || || ||| |||||||||||| |||||||    
T  17034205 aaatcctctataatgactcaattgtctactaaa 17034237  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 8804287 - 8804404
Alignment:
Q  87 ttacatgactcaattgaaaacaatacaaaatatccctcacaccatgtgcaatttctctaaaactcttcgatagtgactcaattgtgtactaaactgattc 186  Q
    |||||||||| |||| |||||| |||||||| |||   | || ||| | |||||||||||||||| |  ||| |||||||||||| |||||||||||||     
T  8804287 ttacatgactgaattaaaaacattacaaaatgtccactaaac-atgagaaatttctctaaaactcctatataatgactcaattgtctactaaactgatta 8804385  T
Q  187 aaaaacatactaaaaataa 205  Q
    ||||| | |||| ||||||    
T  8804386 aaaaaaaaactataaataa 8804404  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 17887871 - 17887804
Alignment:
Q  85 aattacatgactcaat-tgaaaacaatacaaaatatccctcacaccatgtgcaatttctctaaaactc 151  Q
    |||||||||||||||  |||||||| |||||||| ||||| | |||||  ||||||||||||||||||    
T  17887871 aattacatgactcaaaatgaaaacattacaaaatgtccctaaaaccataggcaatttctctaaaactc 17887804  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 11222217 - 11222315
Alignment:
Q  52 cctatgaaattttatggtttaaagatgaaaaataattacatgactcaattgaaaacaatacaaaatatccctcacaccatgtgcaatttctctaaaact 150  Q
    ||||||||||| | | ||||| ||| |||| | ||||||||||||| |||||||||| |||| ||| | ||| | |||||| | || ||||||||||||    
T  11222217 cctatgaaattgtctagtttagagaagaaatagaattacatgactcgattgaaaacattacagaatgttccttaaaccatgggtaacttctctaaaact 11222315  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 13909741 - 13909775
Alignment:
Q  173 tactaaactgattcaaaaacatactaaaaataacg 207  Q
    ||||||||||| |||||||||||||||||||||||    
T  13909741 tactaaactgactcaaaaacatactaaaaataacg 13909775  T

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Target: scaffold0267 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 5736 - 5671
Alignment:
Q  52 cctatgaaattttatggtttaaagatgaaaaataattacatgactcaattgaaaacaatacaaaat 117  Q
    ||||| ||||| ||| |||||  || |||| ||||||| ||||||||||||||||| |||||||||    
T  5736 cctataaaattatatagtttagggaagaaacataattatatgactcaattgaaaacgatacaaaat 5671  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 24469851 - 24469888
Alignment:
Q  181 tgattcaaaaacatactaaaaataacgtaacatgacct 218  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  24469851 tgattgaaaaacatactaaaaataacgtaagatgacct 24469888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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