View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21014_low_56 (Length: 225)

Name: NF21014_low_56
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21014_low_56
NF21014_low_56
[»] chr8 (2 HSPs)
chr8 (10-206)||(6264329-6264525)
chr8 (113-166)||(6332876-6332929)
[»] chr2 (1 HSPs)
chr2 (73-171)||(42694063-42694161)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 6264525 - 6264329
Alignment:
Q  10 cgaacaatatcattagaatgaaaaatattttactgttacttataatttttattgaattatcacaacagatcctaacagtgagagcaggagctctagtgtg 109  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6264525 cgaaaaatatcattataatgaaaaatattttactgttacttataatttttattgaattatcacaacagatcctaacagtgagagcaggagctctagtgtg 6264426  T
Q  110 tatattccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggacttaagtctgtttctcaagatgtaattccattgatac 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6264425 tatattccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggacttaagtctgtttctcaagatgtaattccattgatac 6264329  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 6332929 - 6332876
Alignment:
Q  113 attccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttat 166  Q
    ||||||||||||||| | || ||||||||||| || ||||||||||||||||||    
T  6332929 attccaagagatgaatcatttggccacttgaagtcttcagactttcttgtttat 6332876  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 42694161 - 42694063
Alignment:
Q  73 aacagatcctaacagtgagagcaggagctctagtgtgtatattccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggact 171  Q
    |||||||||||| |||||||| |||||   |  ||||||| ||||||||||||||||||| || ||||||||||| ||||| ||||||  |||||||||    
T  42694161 aacagatcctaaaagtgagagtaggagtgattttgtgtatcttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggact 42694063  T

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