View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_low_58 (Length: 220)
Name: NF21014_low_58
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_low_58 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 21314598 - 21314416
Alignment:
| Q |
24 |
atatgcatataaaaaagcat--ggttatcattaacatcagactttctactctaannnnnnnn-ctcagtttctctttctcttgtcacacaatctatgtaa |
120 |
Q |
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| T |
21314598 |
atatgcatataaaaaagcatatggttatcattaacataagactttctactctaaattttttttctcagtttctctttctcttgtcaca--atctacgtaa |
21314501 |
T |
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| Q |
121 |
agaagcctatattaatccaaaattgaaccagttctaagttctaaagagtagcatatgcaaatattattgtttatatcacacaagt |
205 |
Q |
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| T |
21314500 |
agaagcctatattaatccaaaattgaaccagttctaagttctaaagaatagcatatacaaatattattgtttatatcacacaagt |
21314416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 21217240 - 21217192
Alignment:
| Q |
134 |
aatccaaaattgaaccagttctaagttctaaagagtagcatatgcaaat |
182 |
Q |
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| T |
21217240 |
aatccaaaatttaacaagttcaaagttctaaagaatagcatatacaaat |
21217192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 21638403 - 21638448
Alignment:
| Q |
131 |
attaatccaaaattgaaccagttctaagttctaaagagtagcatat |
176 |
Q |
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| T |
21638403 |
attaatccaaaattgaacaagttcaaagttctaaagaatagcatat |
21638448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 10410 - 10461
Alignment:
| Q |
131 |
attaatccaaaattgaaccagttctaagttctaaagagtagcatatgcaaat |
182 |
Q |
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| T |
10410 |
attaatccaaaattgaacaagttcaaagttttaaagaatagcatatacaaat |
10461 |
T |
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