View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21014_low_59 (Length: 218)

Name: NF21014_low_59
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21014_low_59
NF21014_low_59
[»] chr6 (6 HSPs)
chr6 (1-217)||(6906764-6906980)
chr6 (76-213)||(34517-34654)
chr6 (76-188)||(1747958-1748068)
chr6 (81-188)||(7267402-7267508)
chr6 (102-169)||(32945426-32945492)
chr6 (80-213)||(6293408-6293541)
[»] chr7 (15 HSPs)
chr7 (79-188)||(41483646-41483754)
chr7 (76-188)||(40138960-40139071)
chr7 (91-188)||(28858204-28858300)
chr7 (80-213)||(45601609-45601742)
chr7 (80-132)||(39812152-39812204)
chr7 (76-128)||(45841008-45841060)
chr7 (133-184)||(30200032-30200083)
chr7 (80-186)||(36101793-36101898)
chr7 (139-188)||(29653620-29653669)
chr7 (153-194)||(30664721-30664762)
chr7 (79-128)||(35172080-35172129)
chr7 (144-188)||(1569175-1569219)
chr7 (144-188)||(24549767-24549811)
chr7 (152-188)||(30144934-30144970)
chr7 (76-184)||(47604029-47604136)
[»] chr4 (20 HSPs)
chr4 (80-188)||(37042680-37042787)
chr4 (76-194)||(44719373-44719493)
chr4 (139-192)||(6843770-6843823)
chr4 (74-213)||(8598951-8599090)
chr4 (80-188)||(25574983-25575090)
chr4 (82-185)||(44047388-44047491)
chr4 (103-188)||(32339718-32339802)
chr4 (87-184)||(40018212-40018308)
chr4 (119-188)||(44384989-44385057)
chr4 (88-188)||(31403058-31403157)
chr4 (80-183)||(22420733-22420835)
chr4 (80-175)||(31339696-31339790)
chr4 (96-187)||(41192221-41192311)
chr4 (68-186)||(29801540-29801657)
chr4 (152-213)||(47147506-47147568)
chr4 (102-188)||(47372810-47372895)
chr4 (80-186)||(55007907-55008012)
chr4 (123-188)||(42639079-42639143)
chr4 (104-188)||(44686611-44686693)
chr4 (76-112)||(54963684-54963720)
[»] chr2 (15 HSPs)
chr2 (81-188)||(8197558-8197664)
chr2 (81-188)||(8202318-8202424)
chr2 (88-188)||(19224940-19225039)
chr2 (80-188)||(37470149-37470256)
chr2 (88-188)||(43832257-43832356)
chr2 (81-188)||(12026029-12026128)
chr2 (67-213)||(19234987-19235133)
chr2 (146-188)||(19024337-19024379)
chr2 (76-213)||(33287554-33287691)
chr2 (80-204)||(33504365-33504490)
chr2 (139-188)||(1626354-1626403)
chr2 (107-188)||(3305852-3305932)
chr2 (88-188)||(3481313-3481412)
chr2 (156-188)||(13240854-13240886)
chr2 (144-188)||(31254447-31254491)
[»] chr3 (11 HSPs)
chr3 (82-187)||(29601052-29601156)
chr3 (144-188)||(21200707-21200751)
chr3 (153-213)||(29475821-29475880)
chr3 (96-188)||(36304125-36304216)
chr3 (76-132)||(40991645-40991701)
chr3 (76-115)||(32350151-32350190)
chr3 (104-194)||(41425378-41425467)
chr3 (80-204)||(46431695-46431819)
chr3 (96-188)||(39235297-39235387)
chr3 (152-188)||(40982055-40982091)
chr3 (152-188)||(41452827-41452863)
[»] chr1 (16 HSPs)
chr1 (80-188)||(7124300-7124407)
chr1 (80-188)||(33560874-33560981)
chr1 (87-186)||(38869043-38869141)
chr1 (80-188)||(8796368-8796475)
chr1 (79-213)||(8203149-8203283)
chr1 (80-213)||(3818872-3819005)
chr1 (145-218)||(30834057-30834131)
chr1 (81-186)||(42501269-42501373)
chr1 (102-194)||(10569109-10569200)
chr1 (87-188)||(37591153-37591251)
chr1 (76-213)||(6025738-6025875)
chr1 (152-204)||(12231507-12231560)
chr1 (80-188)||(4590548-4590655)
chr1 (80-213)||(8342900-8343030)
chr1 (76-132)||(28533681-28533737)
chr1 (144-192)||(43423874-43423922)
[»] scaffold0373 (1 HSPs)
scaffold0373 (139-192)||(2375-2428)
[»] chr5 (13 HSPs)
chr5 (81-188)||(12576877-12576983)
chr5 (76-183)||(14667935-14668041)
chr5 (76-188)||(7359273-7359383)
chr5 (146-194)||(4460360-4460408)
chr5 (82-213)||(27998574-27998705)
chr5 (144-188)||(42199552-42199596)
chr5 (144-213)||(14749440-14749510)
chr5 (87-188)||(28005694-28005798)
chr5 (80-132)||(1275478-1275530)
chr5 (68-172)||(18350906-18351009)
chr5 (154-213)||(29922417-29922477)
chr5 (103-167)||(41808102-41808165)
chr5 (80-132)||(42272691-42272743)
[»] chr8 (12 HSPs)
chr8 (123-188)||(10108972-10109036)
chr8 (80-181)||(23492200-23492300)
chr8 (76-129)||(26642719-26642772)
chr8 (90-213)||(23023358-23023481)
chr8 (96-179)||(30748633-30748713)
chr8 (76-115)||(35914613-35914652)
chr8 (141-188)||(38483045-38483092)
chr8 (87-188)||(79186-79286)
chr8 (76-129)||(26639243-26639296)
chr8 (146-204)||(39388924-39388984)
chr8 (144-184)||(10079986-10080026)
chr8 (80-132)||(26055635-26055687)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 6906764 - 6906980
Alignment:
Q  1 ccaagaccaaagaatattttccatcttgtgtgacctaaaacataggcatgttattagacgacgacggcaacatcaaagtcttatcgcactaagttgggtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  6906764 ccaagaccaaagaatattttccatcttgtgtgacctaaaacatagacatgttattagacgacgacaacaacatcaaagtcttatcgcactaagttgggtc 6906863  T
Q  101 agctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagtctctttatagct 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6906864 ggctacatggatcaatcgacatcataatgttcctatcttataacatttttatatccaactcgttaatatctagatctttcttaatagtctctttatagct 6906963  T
Q  201 tttcaagatcttcatct 217  Q
    |||||||||||||||||    
T  6906964 tttcaagatcttcatct 6906980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 213
Target Start/End: Original strand, 34517 - 34654
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagat 175  Q
    |||||||||| |||||||| ||||||||||||||||||||   ||  ||||||||| ||||| || | |||||||  ||||||||| ||||| | |||||    
T  34517 aagtcttatcccactaagtggggtcagctacatggatcaaattacgccataatgtt-ctatcataaaccatatttcaatccaactcattaatctttagat 34615  T
Q  176 ctttcttaatagtctct-ttatagcttttcaagatcttc 213  Q
    |||||||||| || ||| |||||| ||||| || |||||    
T  34616 ctttcttaatggtttctcttatagtttttctaggtcttc 34654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 1747958 - 1748068
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagat 175  Q
    |||||||||||||| |||| || ||| ||||||||||||| |||| || ||||||| ||||| ||||  |||||| |||||||||| ||||| |||| ||    
T  1747958 aagtcttatcgcaccaagtagg-tcaactacatggatcaaacgacgtcgtaatgtt-ctatcatatactatatttctatccaactcattaatctctaaat 1748055  T
Q  176 ctttcttaatagt 188  Q
     ||||||| ||||    
T  1748056 ttttcttagtagt 1748068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 7267402 - 7267508
Alignment:
Q  81 ttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttc 180  Q
    ||||| ||||| || ||||| |||||||||||||| ||||||||||||||| | ||| |||| ||||||| |||||| ||||   ||  |||||||||||    
T  7267402 ttatctcactatgtggggtctgctacatggatcaaacgacatcataatgttgc-atcatatatcatatttttatccacctcggctatcgctagatctttc 7267500  T
Q  181 ttaatagt 188  Q
    | ||||||    
T  7267501 taaatagt 7267508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 32945492 - 32945426
Alignment:
Q  102 gctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatat 169  Q
    |||||||||||||| ||||| ||||||||| ||||| ||||| |||||| |||| ||||| |||||||    
T  32945492 gctacatggatcaaacgacaccataatgtt-ctatcatataaaatatttctatctaactcattaatat 32945426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 6293408 - 6293541
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| |||||||| ||||| ||||||| || ||| ||    ||||||| || |||| |||| ||||||| |||| ||||| ||||||||||||| |||    
T  6293408 cttatcccactaagtggggtcggctacattgaccaaacgttgccataatgctc-tatcatataccatatttctatctaactcattaatatctagatattt 6293506  T
Q  180 cttaatagtctct-ttatagcttttcaagatcttc 213  Q
    | ||||||| ||| || ||| ||||| ||||||||    
T  6293507 cctaatagtttctattttagtttttctagatcttc 6293541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 41483754 - 41483646
Alignment:
Q  79 tcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctt 178  Q
    ||||||| |||||||| ||||| |||||||||||||   |||| ||||| |||| || | |||| ||||| |||||||||||||||||| ||||||||||    
T  41483754 tcttatcccactaagtggggtcggctacatggatcatatgacaccataaagttc-taccatatatcatatctatatccaactcgttaatttctagatctt 41483656  T
Q  179 tcttaatagt 188  Q
    ||||||||||    
T  41483655 tcttaatagt 41483646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 40138960 - 40139071
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagat 175  Q
    ||||||||||||||||||| ||||| ||||||||||||||  ||| ||||||| || ||||| |||  ||||||| |||| ||| | ||||| |||||||    
T  40138960 aagtcttatcgcactaagtggggtctgctacatggatcaaatgacgtcataatatt-ctatcatatgtcatatttctatcaaacgcattaatctctagat 40139058  T
Q  176 ctttcttaatagt 188  Q
    |||||||||||||    
T  40139059 ctttcttaatagt 40139071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 28858300 - 28858204
Alignment:
Q  91 aagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||| ||||| ||||||| ||||||  || ||||||| |||| |||| ||||| |||||| |||||||||  ||||| ||||||||||||||||||||    
T  28858300 aagtggggtcggctacattgatcaaatgagatcataacgttc-tatcatataaaatatttctatccaacttattaatctctagatctttcttaatagt 28858204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 45601742 - 45601609
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| ||||||||  | |||||||||||||||||   ||| |||| ||||| |||| || | |||||||  ||||||||| ||||| |||||||||||    
T  45601742 cttatcccactaagtgagttcagctacatggatcaaattacaccatagtgttc-tatcataaatcatattttgatccaactcattaatctctagatcttt 45601644  T
Q  180 cttaatagtctct-ttatagcttttcaagatcttc 213  Q
    |||||| || ||| |||||| ||||| || |||||    
T  45601643 cttaatggtttctcttatagtttttctaggtcttc 45601609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 39812204 - 39812152
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttc 132  Q
    |||||| |||||||| ||| || ||||||||||||| ||||||||||||||||    
T  39812204 cttatcccactaagtggggccaactacatggatcaaacgacatcataatgttc 39812152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 45841008 - 45841060
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataat 128  Q
    |||||||||  |||||| | |||||||||||||||||||| ||||||||||||    
T  45841008 aagtcttataccactaattggggtcagctacatggatcaaacgacatcataat 45841060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 30200032 - 30200083
Alignment:
Q  133 ctatcttataacatatttatatccaactcgttaatatctagatctttcttaa 184  Q
    ||||| |||| |||||||||||| ||||| ||||| ||||||||||||||||    
T  30200032 ctatcatataccatatttatatcaaactcattaatctctagatctttcttaa 30200083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 36101793 - 36101898
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| |||||||| |||||| |||||||||||||   || |||||||||| ||||| || | |||||||  ||||||||| ||||| | || ||||||    
T  36101793 cttatcccactaagtggggtcaactacatggatcaaattacgtcataatgtt-ctatcataaaccatattttgatccaactcattaatctataaatcttt 36101891  T
Q  180 cttaata 186  Q
    | |||||    
T  36101892 cataata 36101898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 29653620 - 29653669
Alignment:
Q  139 tataacatatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||| ||||||| |||| ||||| ||||| ||||||||||||||||||||    
T  29653620 tatatcatatttctatctaactcattaatctctagatctttcttaatagt 29653669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 30664762 - 30664721
Alignment:
Q  153 atccaactcgttaatatctagatctttcttaatagtctcttt 194  Q
    ||||||||| ||||| |||||||||||||||||||| |||||    
T  30664762 atccaactcattaatctctagatctttcttaatagtttcttt 30664721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 35172080 - 35172129
Alignment:
Q  79 tcttatcgcactaagttgggtcagctacatggatcaatcgacatcataat 128  Q
    ||||||| |||||||| ||||| |||||||| ||||| ||||||||||||    
T  35172080 tcttatctcactaagtagggtcggctacatgaatcaaacgacatcataat 35172129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 1569219 - 1569175
Alignment:
Q  144 catatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  1569219 catattttgatccaactcattaatctctagatctttcttaatagt 1569175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 24549767 - 24549811
Alignment:
Q  144 catatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  24549767 catatttcaatccaactcattaatctctagatctttcttaatagt 24549811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 30144970 - 30144934
Alignment:
Q  152 tatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  30144970 tatccaactcattaatctctagatctttcttaatagt 30144934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 47604136 - 47604029
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagat 175  Q
    |||||||||| || |||||  ||||| ||||||| ||||| | ||| |||| | ||| |||  |||| ||||||| | || ||||| |||||||||||||    
T  47604136 aagtcttatcccattaagtgaggtcaactacatgtatcaaacaacaccatagtattc-tattatataccatatttctctcaaactcattaatatctagat 47604038  T
Q  176 ctttcttaa 184  Q
    |||||||||    
T  47604037 ctttcttaa 47604029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 37042680 - 37042787
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| |||||||| ||||| |||||||||||||| ||||| ||||||||| |||||  ||| | ||||| ||||||||||  |||| |||||||||||    
T  37042680 cttatcccactaagtcgggtcggctacatggatcaaacgacaccataatgtt-ctatcaaataccgtatttctatccaactcaataatctctagatcttt 37042778  T
Q  180 cttaatagt 188  Q
    |||||||||    
T  37042779 cttaatagt 37042787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 44719373 - 44719493
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgt---taatatcta 172  Q
    |||||||||| |||||||| ||||| |||||||||||||| ||||| ||||||| | ||||  |||| | ||||| |||| ||||| |   |||||| ||    
T  44719373 aagtcttatcccactaagtagggtcggctacatggatcaaacgacaccataatgct-ctattatataccgtatttctatctaactcattaataatattta 44719471  T
Q  173 gatctttcttaatagtctcttt 194  Q
    |||||||||||||||| |||||    
T  44719472 gatctttcttaatagtttcttt 44719493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 6843823 - 6843770
Alignment:
Q  139 tataacatatttatatccaactcgttaatatctagatctttcttaatagtctct 192  Q
    |||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||    
T  6843823 tataacatatttctatcaaactcattaatctctagatctttcttaatagtctct 6843770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 8598951 - 8599090
Alignment:
Q  74 caaagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctag 173  Q
    |||||||||||| |||||||| | ||| |||||||| ||||| ||||  ||||||||| |||||  ||| | ||||| | || ||||| |||| || |||    
T  8598951 caaagtcttatcccactaagtggcgtcggctacatgaatcaaacgacgccataatgtt-ctatcaaataccttatttctttctaactcattaacatttag 8599049  T
Q  174 atctttcttaatagtctct-ttatagcttttcaagatcttc 213  Q
    ||||||||||||||| ||| |||||| ||||| || |||||    
T  8599050 atctttcttaatagtttctcttatagtttttctaggtcttc 8599090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 25575090 - 25574983
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| |||||| | ||||| ||||||||||||||   ||| || ||||||| |||| || | |||||||  ||||||||| ||||| |||||||||||    
T  25575090 cttatcccactaaatggggtctgctacatggatcaaattacaccacaatgttc-tatcataaaccatatttcgatccaactcattaatctctagatcttt 25574992  T
Q  180 cttaatagt 188  Q
    |||||||||    
T  25574991 cttaatagt 25574983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 44047388 - 44047491
Alignment:
Q  82 tatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttct 181  Q
    |||| |||||||| ||||  |||||||| ||||| || || ||| ||| || |||| |||| ||||||  |||||||||| ||||| |||||||||||||    
T  44047388 tatcccactaagtggggttggctacatgaatcaaacgtcaccattatgctcttatcatataccatattattatccaactcattaatctctagatctttct 44047487  T
Q  182 taat 185  Q
    ||||    
T  44047488 taat 44047491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 32339802 - 32339718
Alignment:
Q  103 ctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    ||||||||||||| ||||  |||||| ||| |||| |||| ||||| | |||||||||||||||| ||||| | ||||||||||||    
T  32339802 ctacatggatcaaacgacgccataattttc-tatcatatatcatatctctatccaactcgttaatctctaggtatttcttaatagt 32339718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 40018212 - 40018308
Alignment:
Q  87 cactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaa 184  Q
    |||||||| ||||| |||||||||||||| ||||  | ||||||| ||||| |||| |||||   |||||||||| || || ||||||||||||||||    
T  40018212 cactaagtggggtcggctacatggatcaaacgacgccgtaatgtt-ctatcatatatcatatccctatccaactcattgatctctagatctttcttaa 40018308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 44385057 - 44384989
Alignment:
Q  119 acatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||||||||||||| |||| || | |||||| ||||||||||  ||||| ||||||||||||||||||||    
T  44385057 acatcataatgttc-tatcataaaccatattaatatccaacttattaatctctagatctttcttaatagt 44384989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 31403058 - 31403157
Alignment:
Q  88 actaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatag 187  Q
    ||||||| |||||  ||||||||||||| | ||| ||||||| || |||| |||| || |||| |||||||||  ||||| |||||||||||| ||||||    
T  31403058 actaagtggggtcgtctacatggatcaagcaacaccataatgctc-tatcatataccacatttctatccaactaattaatctctagatctttcataatag 31403156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 22420733 - 22420835
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| |||||||| |||||| |||||| |||||| | ||  ||||||| || |||| | || ||||| | |||||||||| ||||| |||||||||||    
T  22420733 cttatcccactaagtggggtcaactacatagatcaaacaacgccataatgctc-tatcatttaccatatctctatccaactcattaatctctagatcttt 22420831  T
Q  180 ctta 183  Q
    ||||    
T  22420832 ctta 22420835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 31339790 - 31339696
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagat 175  Q
    |||||| |||||||| ||||| | |||||||| ||| |||| |||||||||| ||||| | || |||||||  ||||||||| ||||| |||||||    
T  31339790 cttatcccactaagtggggtcggatacatggaccaaacgacgtcataatgtt-ctatcatgtaccatatttcgatccaactcattaatctctagat 31339696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 41192311 - 41192221
Alignment:
Q  96 gggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatag 187  Q
    ||||| |||||||||||| | |||   |||||||||| || | |||| ||||||| |||||||||| ||||| |||||||||||||| ||||    
T  41192311 gggtcggctacatggatcgaacgaagccataatgttc-taccatataccatatttctatccaactcattaatctctagatctttctttatag 41192221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 186
Target Start/End: Complemental strand, 29801657 - 29801540
Alignment:
Q  68 caacatcaaagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaat 167  Q
    ||||| |||||||||||| |||| |||  ||||||||||||||||||| ||||  |||||| || | ||| |||| |||||||  ||||| ||| |||||    
T  29801657 caacagcaaagtcttatctcactgagtgaggtcagctacatggatcaaacgacgccataat-tttcaatcatatatcatatttcaatccagctcattaat 29801559  T
Q  168 atctagatctttcttaata 186  Q
     | ||||| || |||||||    
T  29801558 ttatagattttccttaata 29801540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 47147568 - 47147506
Alignment:
Q  152 tatccaactcgttaatatctagatctttcttaatagtctctt-tatagcttttcaagatcttc 213  Q
    |||||||||| ||||| |||||||||||||||||||| |||| ||||| ||||| || |||||    
T  47147568 tatccaactcattaatctctagatctttcttaatagtttcttctatagtttttctaggtcttc 47147506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 188
Target Start/End: Complemental strand, 47372895 - 47372810
Alignment:
Q  102 gctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||||||||||||| ||||  ||||||||| ||||  |||| ||||||| |||||||||| ||||| ||| ||||||| ||| ||||    
T  47372895 gctacatggatcaaacgactccataatgtt-ctataatataccatatttctatccaactcattaatctctggatctttattagtagt 47372810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 55008012 - 55007907
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| |||||||| ||||| ||||||||||||||   || |||||||| | ||||| || | |||||||   |||||||| ||||| |||| ||||||    
T  55008012 cttatcccactaagtggggtcggctacatggatcaaattacgtcataatgat-ctatcataaaccatatttcggtccaactcattaatctctaaatcttt 55007914  T
Q  180 cttaata 186  Q
    |||||||    
T  55007913 cttaata 55007907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 42639079 - 42639143
Alignment:
Q  123 cataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||||||||| ||||  ||| ||||||| |||||||||| |||||  |||||||||||||||||||    
T  42639079 cataatgttc-tatcaaataccatatttctatccaactcattaatcgctagatctttcttaatagt 42639143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 44686611 - 44686693
Alignment:
Q  104 tacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    ||||| ||| || ||||| |||||||||| |||| |||| ||||||| || ||||||||||||| ||||||| |||||| |||||    
T  44686611 tacatagataaaacgacaccataatgttc-tatcatatatcatattt-tacccaactcgttaatctctagatttttcttgatagt 44686693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 54963720 - 54963684
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggat 112  Q
    |||||||||| |||||||||||||||| |||||||||    
T  54963720 aagtcttatcccactaagttgggtcaggtacatggat 54963684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 8197558 - 8197664
Alignment:
Q  81 ttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttc 180  Q
    ||||| |||||||| ||||| |||||||||||||| ||||  |||||| ||| |||| |||| ||||||| |||||||||| ||||| | ||||||||||    
T  8197558 ttatcccactaagtagggtcggctacatggatcaaacgacgccataatattc-tatcatatatcatatttctatccaactcattaatctttagatctttc 8197656  T
Q  181 ttaatagt 188  Q
    ||||||||    
T  8197657 ttaatagt 8197664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 8202318 - 8202424
Alignment:
Q  81 ttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttc 180  Q
    ||||| |||||||| ||||| |||||||||||||| ||||  |||||| ||| |||| |||| ||||||| |||||||||| ||||| | ||||||||||    
T  8202318 ttatcccactaagtagggtcggctacatggatcaaacgacgccataatattc-tatcatatatcatatttctatccaactcattaatctttagatctttc 8202416  T
Q  181 ttaatagt 188  Q
    ||||||||    
T  8202417 ttaatagt 8202424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 19225039 - 19224940
Alignment:
Q  88 actaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatag 187  Q
    ||||||| ||||| |||||||||||||| |||||||||| |||| ||||| |||| | ||| | ||||||| ||  ||||||||| ||||||| ||||||    
T  19225039 actaagtggggtcggctacatggatcaaacgacatcatagtgtt-ctatcatatatcgtatatgtatccaattcaataatatctaaatctttcgtaatag 19224941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 37470149 - 37470256
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| |||||||| || | ||||||||||||||| | ||| ||||||||| ||||| |||  |||||||  ||||||||| ||||| ||||||||| |    
T  37470149 cttatcccactaagtgggattagctacatggatcaaactacaccataatgtt-ctatcatatgccatatttcgatccaactcattaatctctagatctgt 37470247  T
Q  180 cttaatagt 188  Q
    | |||||||    
T  37470248 cctaatagt 37470256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 43832356 - 43832257
Alignment:
Q  88 actaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatag 187  Q
    ||||||||||||||||||||||||||||  | | |||||||||| ||||  || | |||||   |||||||||| ||||| |||||||| ||||||||||    
T  43832356 actaagttgggtcagctacatggatcaaatgccgtcataatgtt-ctataatacatcatatccttatccaactcattaatctctagatccttcttaatag 43832258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 12026029 - 12026128
Alignment:
Q  81 ttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttc 180  Q
    ||||| |||||||| |||||||||||||||||||| |||| | ||||| ||      ||||  ||||||| |||| ||||| ||||| ||||||||||||    
T  12026029 ttatcccactaagtggggtcagctacatggatcaaacgacgttataatatt------ttat--catatttctatcaaactcattaatctctagatctttc 12026120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 213
Target Start/End: Original strand, 19234987 - 19235133
Alignment:
Q  67 gcaacatcaaagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaa 166  Q
    |||||| | ||| |||||| |||||||| | ||  ||||||||||| || ||||  || ||||||| ||||  ||| ||||||| ||||||| || ||||    
T  19234987 gcaacaactaagccttatcccactaagtggagttggctacatggattaaacgacgacagaatgttc-tatcaaataccatatttctatccaaatcattaa 19235085  T
Q  167 tatctagatctttcttaatagtctct-ttatagcttttcaagatcttc 213  Q
    | ||||||||||||| |||||| ||| |||||| ||||| || |||||    
T  19235086 tctctagatctttctcaatagtttctcttatagtttttctaggtcttc 19235133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 19024379 - 19024337
Alignment:
Q  146 tatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||||||||||||||| ||||| | ||||||||||||||||||    
T  19024379 tatttatatccaactcattaatctttagatctttcttaatagt 19024337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 213
Target Start/End: Complemental strand, 33287691 - 33287554
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagat 175  Q
    ||||||| || |||||||| | ||  |||||| ||||||| | |  ||||||||||| |||| || | |||||||  ||| ||||| ||||| |||||||    
T  33287691 aagtcttgtcccactaagtggagttggctacaaggatcaaactatgtcataatgttc-tatcataaaccatatttcgatctaactcattaatttctagat 33287593  T
Q  176 ctttcttaatagtctct-ttatagcttttcaagatcttc 213  Q
    ||||||||||||| ||| |||||| ||||| || |||||    
T  33287592 ctttcttaatagtttctcttatagtttttctaggtcttc 33287554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 33504490 - 33504365
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaa-tatctagatctt 178  Q
    |||||| |||||||| ||||| |||| |||||||||   ||  |||||||||| |||| |||| |||||||  ||||||||  |||| | ||||||||||    
T  33504490 cttatcccactaagtggggtcggctagatggatcaaattacgccataatgttc-tatcatataccatatttcaatccaacttattaaatctctagatctt 33504392  T
Q  179 tcttaatagtctct-ttatagcttttc 204  Q
    |||||||||| ||| |||||| |||||    
T  33504391 tcttaatagtttctcttatagtttttc 33504365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 1626403 - 1626354
Alignment:
Q  139 tataacatatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||| ||||||| ||| |||||| ||||| ||||||||||||||||||||    
T  1626403 tatatcatatttttatacaactcattaatctctagatctttcttaatagt 1626354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 3305852 - 3305932
Alignment:
Q  107 atggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    ||||||||| ||||  |||||||||| || | |||| ||| | |||||||||||||||||| ||||||| |||||| |||||    
T  3305852 atggatcaaacgacgccataatgttc-taccgtatatcatttctatatccaactcgttaatctctagatatttctttatagt 3305932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 3481412 - 3481313
Alignment:
Q  88 actaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatag 187  Q
    ||||||| ||||||||||||||||||||   ||  ||||||||| ||||| || | ||||||| | ||||||| |||||| || | ||||||| ||||||    
T  3481412 actaagtggggtcagctacatggatcaaattacgccataatgtt-ctatcatagaccatatttctgtccaacttgttaatttccaaatctttcctaatag 3481314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 13240854 - 13240886
Alignment:
Q  156 caactcgttaatatctagatctttcttaatagt 188  Q
    |||||||||||| ||||||||||||||||||||    
T  13240854 caactcgttaatctctagatctttcttaatagt 13240886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 31254491 - 31254447
Alignment:
Q  144 catatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    ||||||| ||| |||||| ||||| ||||||||||||||||||||    
T  31254491 catatttctattcaactcattaatctctagatctttcttaatagt 31254447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 29601156 - 29601052
Alignment:
Q  82 tatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttct 181  Q
    |||| |||||||| ||||||||||||||||||||   ||||||||||||| ||||| || |  ||||||  ||||||||| ||||| |||| ||||||||    
T  29601156 tatcccactaagtggggtcagctacatggatcaaattacatcataatgtt-ctatcataaactatatttgaatccaactcattaatctctaaatctttct 29601058  T
Q  182 taatag 187  Q
    ||||||    
T  29601057 taatag 29601052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 21200751 - 21200707
Alignment:
Q  144 catatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||    
T  21200751 catatttctatccaactcattaatatctagatctttctaaatagt 21200707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 29475880 - 29475821
Alignment:
Q  153 atccaactcgttaatatctagatctttcttaatagtctctttatagcttttcaagatcttc 213  Q
    ||||||||| ||||| |||||||||||||||||||| || |||||||||||| || |||||    
T  29475880 atccaactcattaatctctagatctttcttaatagtttc-ttatagcttttctaggtcttc 29475821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 36304216 - 36304125
Alignment:
Q  96 gggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    ||||| ||||||||||||||   ||  |||||||| |||||| || | |||||||  ||||||||| ||||| ||||||||||||||||||||    
T  36304216 gggtcggctacatggatcaaattacgccataatgt-cctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagt 36304125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 40991701 - 40991645
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttc 132  Q
    |||||||||| |||||||| ||||||||||||||||||||   ||| ||||||||||    
T  40991701 aagtcttatctcactaagtggggtcagctacatggatcaaattacaccataatgttc 40991645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 32350151 - 32350190
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaa 115  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  32350151 aagtcttatctcactaagttgggtcggctacatggatcaa 32350190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 41425378 - 41425467
Alignment:
Q  104 tacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagtctcttt 194  Q
    |||||||||||| |||||||||||| || ||||| |||| || ||   |||||||||| |||||||||| || ||| |||||||| |||||    
T  41425378 tacatggatcaaacgacatcataatatt-ctatcatatagcacatccctatccaactcattaatatctaaatgttttttaatagtttcttt 41425467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 46431695 - 46431819
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| |||||||| ||||  || ||||||||||| ||||  |  |||||||| ||| ||||  |||| | |||||||||| ||||| |||||||||||    
T  46431695 cttatcccactaagtggggttggcgacatggatcaaacgacgcctcaatgttcc-atcatatataatatctctatccaactcattaatctctagatcttt 46431793  T
Q  180 cttaatagtctct-ttatagcttttc 204  Q
     |||||||| ||| |||||| |||||    
T  46431794 tttaatagtttctcttatagtttttc 46431819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 39235387 - 39235297
Alignment:
Q  96 gggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    ||||| |||||||||||||||| ||  ||||||||| ||||| || | |||||||| ||||||||| ||||  |||| ||||||| |||||||    
T  39235387 gggtcggctacatggatcaatc-acgacataatgtt-ctatcgtaaaccatatttagatccaactcattaacttctaaatctttcctaatagt 39235297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 40982091 - 40982055
Alignment:
Q  152 tatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||||||| | ||||||||||||||||||||||||||    
T  40982091 tatccaacacattaatatctagatctttcttaatagt 40982055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 41452827 - 41452863
Alignment:
Q  152 tatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  41452827 tatccaactcattaatctctagatctttcttaatagt 41452863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 7124407 - 7124300
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| ||||||||  ||||||||||||||||||| ||||| ||||||| | ||||| |||| ||||||| ||||||| || |||||   |||||||||    
T  7124407 cttatcccactaagtgaggtcagctacatggatcaaacgacaccataatgct-ctatcctataccatatttctatccaattcattaatcaatagatcttt 7124309  T
Q  180 cttaatagt 188  Q
    || ||||||    
T  7124308 ctcaatagt 7124300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 33560874 - 33560981
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| |||||||| ||||  |||||||||||||| | |  ||||||||||| | |  |||| ||||||||||||||||||| |||| ||||||||||     
T  33560874 cttatcccactaagtagggttggctacatggatcaaacaatgtcataatgttc-tctgatataccatatttatatccaactcgctaatctctagatctta 33560972  T
Q  180 cttaatagt 188  Q
    |||||||||    
T  33560973 cttaatagt 33560981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 38869141 - 38869043
Alignment:
Q  87 cactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaata 186  Q
    |||||||| ||||| |||||||||||||| ||||  ||||||||| ||||| |||| ||||| | |||||||| | |||||  |||||||||||||||||    
T  38869141 cactaagtggggtcggctacatggatcaaacgacgccataatgtt-ctatcatataccatatatctatccaacccattaatcgctagatctttcttaata 38869043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 8796475 - 8796368
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| |||||||| ||||| ||||||||||| ||   ||  |||||||||| |||| || | |||||||  |||||| || |||||||||||||||||    
T  8796475 cttatcccactaagtggggtcggctacatggattaaattacgccataatgttc-tatcataaaccatatttcaatccaagtcattaatatctagatcttt 8796377  T
Q  180 cttaatagt 188  Q
    |||||||||    
T  8796376 cttaatagt 8796368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 213
Target Start/End: Original strand, 8203149 - 8203283
Alignment:
Q  79 tcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctt 178  Q
    ||||||| |||||||| ||||| ||||||||||| |||| ||  ||||||||| ||||||| || ||||  |   |||||||| ||||| ||||||||||    
T  8203149 tcttatcacactaagtggggtcggctacatggataaatcaacgccataatgtt-ctatcttctatcatacctccgtccaactcattaatctctagatctt 8203247  T
Q  179 tcttaatagtctct-ttatagcttttcaagatcttc 213  Q
    | |||||||| ||| |||||| ||||| || |||||    
T  8203248 ttttaatagtttctcttatagtttttctaggtcttc 8203283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 3818872 - 3819005
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| ||||||||   ||| ||||||||||||||  | |  ||||||||||| ||| || | ||||||| ||| |||||| ||||| |||| ||||||    
T  3818872 cttatcccactaagtgcagtcggctacatggatcaaatggcgacataatgttcc-atcataaaccatatttctattcaactcattaatctctaaatcttt 3818970  T
Q  180 cttaatagtctct-ttatagcttttcaagatcttc 213  Q
    ||||||||| ||| |||||| |||||||| |||||    
T  3818971 cttaatagtttctcttatagtttttcaaggtcttc 3819005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 30834057 - 30834131
Alignment:
Q  145 atatttatatccaactcgttaatatctagatctttcttaatagtctct-ttatagcttttcaagatcttcatctc 218  Q
    |||||| |||||||||| ||||| |||||||||||| ||||||| ||| |||||||||||| || ||||| ||||    
T  30834057 atatttctatccaactcattaatctctagatctttcgtaatagtttctcttatagcttttctaggtcttcctctc 30834131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 42501373 - 42501269
Alignment:
Q  81 ttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttc 180  Q
    ||||| |||||||| ||||| ||||||||||| || ||||    |||||||| |||| |||  ||||||| |||||||||| ||||| | ||||||||||    
T  42501373 ttatcccactaagtagggtcggctacatggattaaacgacgctgtaatgttc-tatcatattccatatttctatccaactcattaatctatagatctttc 42501275  T
Q  181 ttaata 186  Q
    ||||||    
T  42501274 ttaata 42501269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 10569109 - 10569200
Alignment:
Q  102 gctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagtctcttt 194  Q
    ||||||||||||||  || || ||||||||| |||| ||||  |||||| |||||| ||  ||||| |||||||||||||||||||| |||||    
T  10569109 gctacatggatcaaatgatattataatgttc-tatcatatacgatatttctatccagcttattaatctctagatctttcttaatagtttcttt 10569200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 37591251 - 37591153
Alignment:
Q  87 cactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctaga-tctttcttaat 185  Q
    |||||||| |||| |  |||||||||||| ||||||||||||||| |||||||||   |||| | |||||||||| ||||| |||||| | |||||||||    
T  37591251 cactaagtggggttatttacatggatcaaacgacatcataatgtt-ctatcttat---atatctctatccaactcattaatctctagattttttcttaat 37591156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 213
Target Start/End: Complemental strand, 6025875 - 6025738
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagat 175  Q
    |||| ||||| |||||||| |  || ||||||||||||||  |||  ||| |||||| ||||  ||| ||||||| |||||||||| ||||| |||||||    
T  6025875 aagtattatcccactaagtggaatcggctacatggatcaaatgacgccatcatgttc-tatcagataccatatttctatccaactcattaatctctagat 6025777  T
Q  176 ctttcttaatagtctct-ttatagcttttcaagatcttc 213  Q
    |||| ||| |||| ||| |||||| ||||| || |||||    
T  6025776 cttttttactagtatctcttatagtttttctaggtcttc 6025738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 12231560 - 12231507
Alignment:
Q  152 tatccaactcgttaatatctagatctttcttaatagtctct-ttatagcttttc 204  Q
    |||||||||| ||||| || ||||||||||||||||||||| |||||| |||||    
T  12231560 tatccaactcattaatctcgagatctttcttaatagtctctcttatagtttttc 12231507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 4590548 - 4590655
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| |||||||| ||||| ||||||||||||||   ||| |||| |||| |||||  ||| ||||| | |||||||||| | ||| | || ||||||    
T  4590548 cttatcccactaagtggggtcggctacatggatcaaattacaccatattgtt-ctatcacatatcatatatctatccaactcatcaatctataaatcttt 4590646  T
Q  180 cttaatagt 188  Q
    |||||||||    
T  4590647 cttaatagt 4590655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 8342900 - 8343030
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| |||||||| || |||| ||||| |||||| ||   |||||||||||| |||  |||  |||||| |||||||||| ||||| |||||||||||    
T  8342900 cttatcccactaagtgggatcagatacattgatcaaacg---tcataatgttcc-atcaaatactatatttctatccaactcattaatctctagatcttt 8342995  T
Q  180 cttaatagtctct-ttatagcttttcaagatcttc 213  Q
     ||||| || ||| |||||| ||||| || |||||    
T  8342996 attaattgtttctcttatagtttttctaggtcttc 8343030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 28533737 - 28533681
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttc 132  Q
    |||||||||| |||||||| ||||| ||||||||||||||  ||| ||||| |||||    
T  28533737 aagtcttatcccactaagtggggtcggctacatggatcaaatgacgtcatagtgttc 28533681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 43423922 - 43423874
Alignment:
Q  144 catatttatatccaactcgttaatatctagatctttcttaatagtctct 192  Q
    ||||||| ||||||||||  |||| ||||||||||||||||| ||||||    
T  43423922 catatttctatccaactcactaatctctagatctttcttaatggtctct 43423874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 2375 - 2428
Alignment:
Q  139 tataacatatttatatccaactcgttaatatctagatctttcttaatagtctct 192  Q
    |||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||    
T  2375 tataacatatttctatcaaactcattaatctctagatctttcttaatagtctct 2428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 12576877 - 12576983
Alignment:
Q  81 ttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttc 180  Q
    ||||| |||||| | ||||| |||||||| || ||  |||| ||||||| || |||| |||| ||||||| ||| |||||| ||||| ||||||||||||    
T  12576877 ttatcccactaattggggtcggctacatgtataaaatgacaccataatggtc-tatcatataccatatttctattcaactcattaatctctagatctttc 12576975  T
Q  181 ttaatagt 188  Q
    ||||||||    
T  12576976 ttaatagt 12576983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 14668041 - 14667935
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagat 175  Q
    |||||||||| |||||||| ||||| | ||||||||||||   ||| ||||||||| ||||| || | |||| ||  ||||||||| ||||| |||||||    
T  14668041 aagtcttatcccactaagtggggtcggttacatggatcaaattacaccataatgtt-ctatcataaaccatacttggatccaactcattaatctctagat 14667943  T
Q  176 ctttctta 183  Q
    ||||||||    
T  14667942 ctttctta 14667935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 7359273 - 7359383
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagat 175  Q
    ||||||| || |||||||| ||||||||||||||||||||   || ||||||||||  |||| || | |||||||  ||||||||  ||||| |||||||    
T  7359273 aagtcttgtcccactaagtggggtcagctacatggatcaaattacgtcataatgtt--tatcgtaaaccatatttcgatccaacttattaatctctagat 7359370  T
Q  176 ctttcttaatagt 188  Q
     ||||| ||||||    
T  7359371 ttttctaaatagt 7359383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 4460408 - 4460360
Alignment:
Q  146 tatttatatccaactcgttaatatctagatctttcttaatagtctcttt 194  Q
    ||||| |||||||||| ||||| ||||| ||||||||||||||||||||    
T  4460408 tatttctatccaactcattaatctctaggtctttcttaatagtctcttt 4460360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 27998705 - 27998574
Alignment:
Q  82 tatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttct 181  Q
    |||| |||||||| ||||| | |||||||||||| |||| ||||||| || ||||| |||| ||| ||  |||| ||||| ||||| | |||||||||||    
T  27998705 tatcccactaagtggggtcggttacatggatcaaacgacgtcataatatt-ctatcatatatcatgttcctatctaactcattaatctgtagatctttct 27998607  T
Q  182 taatagtctct-ttatagcttttcaagatcttc 213  Q
    || |||| ||| |||||| ||||| || |||||    
T  27998606 tagtagtttctcttatagtttttctaggtcttc 27998574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 42199596 - 42199552
Alignment:
Q  144 catatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||    
T  42199596 catatttctatccaactcattaatatctagatctttctaaatagt 42199552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 14749510 - 14749440
Alignment:
Q  144 catatttatatccaactcgttaatatctagatctttcttaatagtctct-ttatagcttttcaagatcttc 213  Q
    ||||||| |||||||||||||||| |||||||| ||||| ||||| ||| |||||| ||||| || |||||    
T  14749510 catatttctatccaactcgttaatctctagatccttcttgatagtttctcttatagtttttctaggtcttc 14749440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 28005798 - 28005694
Alignment:
Q  87 cactaagttgggtcagctacatggatcaatcgacatcataatgt---tcctatcttataacatatttatatccaactcgttaatatctagatctttctta 183  Q
    |||||||  |||||| ||||||||||||| ||||| |||||||    | ||||| |||| |||||   |||| ||||| ||||| |||||||||||||||    
T  28005798 cactaagaggggtcaactacatggatcaaacgacaccataatgaatgttctatcgtatatcatatccctatcaaactcattaatctctagatctttctta 28005699  T
Q  184 atagt 188  Q
    |||||    
T  28005698 atagt 28005694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 1275530 - 1275478
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttc 132  Q
    |||||| |||||||| ||||| ||||||||||||||  ||| |||||||||||    
T  1275530 cttatcccactaagtggggtcggctacatggatcaaatgacgtcataatgttc 1275478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 172
Target Start/End: Original strand, 18350906 - 18351009
Alignment:
Q  68 caacatcaaagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaat 167  Q
    ||||||| |||||| ||| ||| | ||  |||| |||||||||||||| |||| |||||||||| ||| |  ||| ||||||| |||||||||| |||||    
T  18350906 caacatccaagtctcatcccaccatgtgaggtcggctacatggatcaaacgacgtcataatgtt-ctaacaaataccatatttctatccaactcattaat 18351004  T
Q  168 atcta 172  Q
     ||||    
T  18351005 ctcta 18351009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 29922477 - 29922417
Alignment:
Q  154 tccaactcgttaatatctagatctttcttaatagtctct-ttatagcttttcaagatcttc 213  Q
    ||||||| |||||| |||| ||||||||||||||| ||| |||||| ||||| ||||||||    
T  29922477 tccaacttgttaatctctaaatctttcttaatagtttctcttatagtttttctagatcttc 29922417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 41808165 - 41808102
Alignment:
Q  103 ctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaat 167  Q
    ||||||||||||| |||  ||||||||||| |||| || | |||||||||||||||||| |||||    
T  41808165 ctacatggatcaaacgatgtcataatgttc-tatcatacatcatatttatatccaactcattaat 41808102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 42272743 - 42272691
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttc 132  Q
    |||||| |||||||| ||||||||||||||||||||  |||  ||||||||||    
T  42272743 cttatcccactaagtggggtcagctacatggatcaaatgacgccataatgttc 42272691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 10109036 - 10108972
Alignment:
Q  123 cataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||||||||| |||| |||||||||| | |||| ||||||||||| ||||||||||||||| ||||    
T  10109036 cataatgttc-tatcatataacatatctctatcaaactcgttaatctctagatctttcttattagt 10108972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 23492300 - 23492200
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    |||||| |||||||| ||||| ||||||||||| ||  |||| |||| |||| ||||| |||| ||||||| |||||||||| |||||  ||| ||||||    
T  23492300 cttatctcactaagtggggtcggctacatggattaaatgacaccatagtgtt-ctatcatatatcatatttctatccaactcattaatcgctacatcttt 23492202  T
Q  180 ct 181  Q
    ||    
T  23492201 ct 23492200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 26642772 - 26642719
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatg 129  Q
    ||||| |||| ||||||||||||||| ||||||||||||| ||||| |||||||    
T  26642772 aagtcgtatcccactaagttgggtcaactacatggatcaaacgacaccataatg 26642719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 23023481 - 23023358
Alignment:
Q  90 taagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaatagtc 189  Q
    ||||| ||||| | |||||||||||| |||| ||||||| ||| |||| |||| ||| ||  |||||||||| ||||| | ||||||||||||| ||||     
T  23023481 taagtggggtcggttacatggatcaaacgacgtcataatattc-tatcatatatcatgttcctatccaactcattaatctgtagatctttcttagtagtt 23023383  T
Q  190 tct-ttatagcttttcaagatcttc 213  Q
    ||| |||||| ||||| || |||||    
T  23023382 tctcttatagtttttctaggtcttc 23023358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 30748713 - 30748633
Alignment:
Q  96 gggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatcttt 179  Q
    ||||||||||||||||||||  |||||||||||||| | ||  |||| ||||||| |||||||||| |||  ||||||||||||    
T  30748713 gggtcagctacatggatcaaatgacatcataatgtt-caattatatatcatatttctatccaactcatta--atctagatcttt 30748633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 35914613 - 35914652
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaa 115  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  35914613 aagtcttatctcactaagtggggtcagctacatggatcaa 35914652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 38483045 - 38483092
Alignment:
Q  141 taacatatttatatccaactcgttaatatctagatctttcttaatagt 188  Q
    |||||||||| |||||||||| ||||| ||||||||||||| ||||||    
T  38483045 taacatatttctatccaactcattaatctctagatctttctgaatagt 38483092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 79286 - 79186
Alignment:
Q  87 cactaagttgggtcagctacatggatcaatcgacatcataatgttcctatcttataacatatttatatccaactcgttaatatctagatctttcttaata 186  Q
    |||||||| ||||| | |||||||||||| ||||  ||| |||||| ||||  |   ||||||| |||||| ||| ||||| ||||||||||||||||||    
T  79286 cactaagtggggtcgggtacatggatcaaacgacgccattatgttc-tatcacaggccatatttctatccagctcattaatctctagatctttcttaata 79188  T
Q  187 gt 188  Q
    ||    
T  79187 gt 79186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 26639296 - 26639243
Alignment:
Q  76 aagtcttatcgcactaagttgggtcagctacatggatcaatcgacatcataatg 129  Q
    ||||| |||| |||||||||||||| | |||||||||||| ||||| |||||||    
T  26639296 aagtcatatctcactaagttgggtcggatacatggatcaaacgacaccataatg 26639243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 39388984 - 39388924
Alignment:
Q  146 tatttatatccaactcgttaatatctagatctttcttaatag--tctctttatagcttttc 204  Q
    ||||| |||||||||| ||||| |||||||||||| ||||||  ||||||||||| |||||    
T  39388984 tatttctatccaactcattaatctctagatctttcctaatagtttctctttatagtttttc 39388924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 10079986 - 10080026
Alignment:
Q  144 catatttatatccaactcgttaatatctagatctttcttaa 184  Q
    ||||||| |||||||||| ||||| ||||||||||||||||    
T  10079986 catatttctatccaactcattaatctctagatctttcttaa 10080026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 26055687 - 26055635
Alignment:
Q  80 cttatcgcactaagttgggtcagctacatggatcaatcgacatcataatgttc 132  Q
    |||||| |||||||| || || |||||||||||||| || |||||||||||||    
T  26055687 cttatcccactaagtgggatcggctacatggatcaaacgccatcataatgttc 26055635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University