View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21014_low_62 (Length: 212)

Name: NF21014_low_62
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21014_low_62
NF21014_low_62
[»] chr5 (14 HSPs)
chr5 (1-54)||(28818918-28818971)
chr5 (1-54)||(3180061-3180114)
chr5 (1-45)||(16439222-16439266)
chr5 (7-43)||(2953210-2953246)
chr5 (6-54)||(26662400-26662448)
chr5 (6-54)||(26933995-26934043)
chr5 (1-43)||(3899851-3899893)
chr5 (1-54)||(6912298-6912351)
chr5 (1-43)||(16971156-16971198)
chr5 (18-54)||(2356381-2356417)
chr5 (18-54)||(2953300-2953336)
chr5 (1-29)||(16439164-16439192)
chr5 (18-54)||(16971254-16971290)
chr5 (1-41)||(38134457-38134497)
[»] chr4 (23 HSPs)
chr4 (1-54)||(47404586-47404639)
chr4 (1-54)||(50384106-50384159)
chr4 (1-43)||(42375022-42375064)
chr4 (1-43)||(47404669-47404711)
chr4 (1-43)||(55089889-55089931)
chr4 (1-43)||(55090008-55090050)
chr4 (1-43)||(55090080-55090122)
chr4 (1-54)||(31430462-31430515)
chr4 (1-54)||(24006071-24006124)
chr4 (1-42)||(40789192-40789233)
chr4 (1-54)||(40789263-40789316)
chr4 (1-41)||(52028633-52028673)
chr4 (6-53)||(24006151-24006198)
chr4 (1-32)||(26186039-26186070)
chr4 (1-56)||(52028548-52028603)
chr4 (8-43)||(54716361-54716396)
chr4 (1-43)||(53954622-53954664)
chr4 (1-50)||(45591415-45591464)
chr4 (6-35)||(45591491-45591520)
chr4 (9-53)||(19184551-19184595)
chr4 (7-43)||(31430548-31430584)
chr4 (18-54)||(42375120-42375156)
chr4 (18-54)||(53954720-53954756)
[»] chr3 (19 HSPs)
chr3 (1-53)||(47677339-47677391)
chr3 (4-63)||(43139701-43139760)
chr3 (1-63)||(29031798-29031859)
chr3 (4-54)||(49418692-49418742)
chr3 (1-42)||(18321735-18321776)
chr3 (1-54)||(33689260-33689313)
chr3 (1-54)||(49414507-49414560)
chr3 (1-43)||(1801579-1801621)
chr3 (1-42)||(29031727-29031768)
chr3 (1-42)||(39385772-39385813)
chr3 (1-53)||(30476476-30476528)
chr3 (1-32)||(27729290-27729321)
chr3 (1-38)||(30476558-30476595)
chr3 (18-59)||(45103096-45103137)
chr3 (1-50)||(47677260-47677309)
chr3 (18-54)||(1272559-1272595)
chr3 (1-37)||(1801530-1801566)
chr3 (1-29)||(18321677-18321705)
chr3 (1-53)||(55223316-55223368)
[»] chr2 (14 HSPs)
chr2 (1-53)||(14464557-14464609)
chr2 (4-54)||(2828585-2828635)
chr2 (1-43)||(2893975-2894017)
chr2 (1-43)||(2894047-2894089)
chr2 (1-43)||(6217308-6217350)
chr2 (1-43)||(15011364-15011406)
chr2 (1-54)||(14229437-14229489)
chr2 (1-36)||(2828668-2828703)
chr2 (18-53)||(14470585-14470620)
chr2 (1-40)||(29925654-29925693)
chr2 (1-43)||(38933599-38933641)
chr2 (4-45)||(2143959-2144000)
chr2 (1-29)||(14229379-14229407)
chr2 (18-54)||(38933697-38933733)
[»] chr1 (26 HSPs)
chr1 (1-45)||(4609080-4609124)
chr1 (1-54)||(48823886-48823939)
chr1 (1-45)||(47303479-47303523)
chr1 (1-42)||(1819502-1819543)
chr1 (1-62)||(9157394-9157454)
chr1 (1-54)||(46333947-46334000)
chr1 (2-54)||(28928780-28928832)
chr1 (1-43)||(29371380-29371422)
chr1 (1-43)||(34062221-34062263)
chr1 (1-43)||(49444995-49445037)
chr1 (1-42)||(32157609-32157650)
chr1 (1-38)||(37155130-37155167)
chr1 (1-38)||(48604964-48605001)
chr1 (1-53)||(15220813-15220865)
chr1 (8-43)||(5694902-5694937)
chr1 (1-40)||(34062293-34062332)
chr1 (7-42)||(36290428-36290463)
chr1 (1-43)||(8337864-8337905)
chr1 (1-43)||(8337935-8337977)
chr1 (1-43)||(19711192-19711234)
chr1 (1-43)||(38674517-38674559)
chr1 (1-43)||(38674587-38674629)
chr1 (1-43)||(46334030-46334072)
chr1 (18-50)||(9157306-9157338)
chr1 (18-54)||(48993909-48993945)
chr1 (18-54)||(49444905-49444941)
[»] chr8 (12 HSPs)
chr8 (1-54)||(34229725-34229778)
chr8 (1-54)||(8243389-8243442)
chr8 (2-54)||(1880323-1880374)
chr8 (4-43)||(36766176-36766215)
chr8 (4-42)||(6296618-6296656)
chr8 (1-43)||(39139845-39139887)
chr8 (1-54)||(34541804-34541857)
chr8 (1-38)||(39850972-39851009)
chr8 (18-54)||(5033271-5033307)
chr8 (1-29)||(5667123-5667151)
chr8 (18-54)||(33841583-33841619)
chr8 (21-53)||(34229634-34229666)
[»] chr7 (14 HSPs)
chr7 (4-45)||(30165334-30165375)
chr7 (7-43)||(4649332-4649368)
chr7 (3-43)||(4649408-4649448)
chr7 (1-53)||(27028795-27028847)
chr7 (1-43)||(29053398-29053440)
chr7 (5-42)||(41018241-41018278)
chr7 (1-43)||(34854707-34854749)
chr7 (1-43)||(42628307-42628349)
chr7 (18-54)||(11016979-11017015)
chr7 (3-43)||(25001359-25001399)
chr7 (1-29)||(27028877-27028905)
chr7 (7-43)||(29053326-29053362)
chr7 (18-54)||(42628405-42628441)
chr7 (7-43)||(45231866-45231902)
[»] chr6 (9 HSPs)
chr6 (1-54)||(31654306-31654359)
chr6 (1-53)||(10521851-10521903)
chr6 (4-43)||(10521936-10521975)
chr6 (1-39)||(551181-551219)
chr6 (1-43)||(12343112-12343154)
chr6 (1-53)||(24618685-24618737)
chr6 (1-34)||(2315325-2315358)
chr6 (1-29)||(17750928-17750956)
chr6 (18-54)||(24618593-24618629)
[»] scaffold1033 (1 HSPs)
scaffold1033 (1-53)||(2297-2349)
[»] scaffold1029 (1 HSPs)
scaffold1029 (1-53)||(2297-2349)
[»] scaffold0047 (2 HSPs)
scaffold0047 (1-43)||(63769-63811)
scaffold0047 (1-43)||(63841-63883)
[»] scaffold0481 (1 HSPs)
scaffold0481 (1-50)||(2892-2941)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-43)||(49787-49829)
[»] scaffold0586 (1 HSPs)
scaffold0586 (18-46)||(7047-7075)


Alignment Details
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28818971 - 28818918
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  28818971 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacccaagtgctac 28818918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3180114 - 3180061
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||    
T  3180114 ttgtgacattatgattgatcaatgtcacccaactctatgtcacacaagtgctac 3180061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16439222 - 16439266
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacac 45  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  16439222 ttgtgacattgtgattgatcaatgtcacccaactctatgtcacac 16439266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 2953246 - 2953210
Alignment:
Q  7 cattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||||||||||||||||||||||||||||||||||||    
T  2953246 cattgtgattgaccaatgtcacccaactctatgtcac 2953210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 26662448 - 26662400
Alignment:
Q  6 acattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  26662448 acattgtgattggtcaatgtcacccaactctatgtcacacaagtgctac 26662400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 26934043 - 26933995
Alignment:
Q  6 acattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  26934043 acattgtgattggtcaatgtcacccaactctatgtcacacaagtgctac 26933995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3899893 - 3899851
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  3899893 ttgtggcattgtgattggccaatgtcacccaactctatgtcac 3899851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6912351 - 6912298
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||||||||||||||||| ||||||| | |||||||||||| || ||||||||    
T  6912351 ttgtgacattgtgattgactaatgtcaactaactctatgtcatacaagtgctac 6912298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16971198 - 16971156
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||    
T  16971198 ttgtggcattgtgattggccaatgtcacccaagtctatgtcac 16971156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 2356381 - 2356417
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  2356381 accaatgtcatccaactctatgtcacacaagtgctac 2356417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 2953300 - 2953336
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||| | ||||||||    
T  2953300 accaatgtcacccaactctatgtcacccaagtgctac 2953336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16439192 - 16439164
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacc 29  Q
    |||||||||||||||||||||||||||||    
T  16439192 ttgtgacattgtgattgaccaatgtcacc 16439164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 16971254 - 16971290
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||| | ||||||||    
T  16971254 accaatgtcacccaactctatgtcacccaagtgctac 16971290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38134457 - 38134497
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtc 41  Q
    ||||||||||||||||| ||||| ||| |||||||||||||    
T  38134457 ttgtgacattgtgattggccaatatcatccaactctatgtc 38134497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 47404639 - 47404586
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  47404639 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacccaagtgctac 47404586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 50384159 - 50384106
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | ||||||||    
T  50384159 ttgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtgctac 50384106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42375064 - 42375022
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  42375064 ttgtggcattgtgattgaccaatgtcacccaactctatgtcac 42375022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 47404669 - 47404711
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  47404669 ttgtggcattgtgattgaccaatgtcacccaactctatgtcac 47404711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 55089931 - 55089889
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  55089931 ttgtgacattgtgattgaccaatgtcactcaactctatgtcac 55089889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 55090050 - 55090008
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  55090050 ttgtgacattgtgattgaccaatgtcactcaactctatgtcac 55090008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 55090080 - 55090122
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  55090080 ttgtgacattgtgattgaccaatgtcactcaactctatgtcac 55090122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31430515 - 31430462
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||  |||||||||||||||||||||||| | ||||||||    
T  31430515 ttgtgacattgtgattggtcaatgtcacccaactctatgtcacccaagtgctac 31430462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24006124 - 24006071
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||| ||||||||||| |||||||||||||||| |||||||| | ||||||||    
T  24006124 ttgtgtcattgtgattggccaatgtcacccaactgtatgtcacccaagtgctac 24006071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40789233 - 40789192
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtca 42  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  40789233 ttgtgacattgtgattggccaatgtcaccaaactctatgtca 40789192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40789263 - 40789316
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||| | ||||||||    
T  40789263 ttgtgacattgtgattggccaatatcaccaaactctatgtcacccaagtgctac 40789316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52028633 - 52028673
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtc 41  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  52028633 ttgtgacattgtgattggccaatgtcacccaattctatgtc 52028673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 24006151 - 24006198
Alignment:
Q  6 acattgtgattgaccaatgtcacccaactctatgtcacaccagtgcta 53  Q
    ||||||||||||  |||||||||||||||||||||||| | |||||||    
T  24006151 acattgtgattggtcaatgtcacccaactctatgtcacccaagtgcta 24006198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 26186070 - 26186039
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  26186070 ttgtgacattgtgattgaccaatgtcacccaa 26186039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 52028603 - 52028548
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctactc 56  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||| | |||| |||||    
T  52028603 ttgtgacatcgtgattggccaatatcacccaactctatgtcacccaagtgttactc 52028548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 54716396 - 54716361
Alignment:
Q  8 attgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||||||||| ||||||||||||||||||||||||    
T  54716396 attgtgattgatcaatgtcacccaactctatgtcac 54716361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 53954664 - 53954622
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||    
T  53954664 ttgtgacattgtgattggccaatgtcacccaactttatatcac 53954622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45591464 - 45591415
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtg 50  Q
    |||||||||| |||||||| |||| ||||||||||||| |||||| ||||    
T  45591464 ttgtgacattatgattgacgaatgccacccaactctatatcacacaagtg 45591415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 45591491 - 45591520
Alignment:
Q  6 acattgtgattgaccaatgtcacccaactc 35  Q
    ||||||||||||||||||||||||||||||    
T  45591491 acattgtgattgaccaatgtcacccaactc 45591520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 19184551 - 19184595
Alignment:
Q  9 ttgtgattgaccaatgtcacccaactctatgtcacaccagtgcta 53  Q
    |||||||||||||||||||||||||| || ||||| | |||||||    
T  19184551 ttgtgattgaccaatgtcacccaactttacgtcacccaagtgcta 19184595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 31430548 - 31430584
Alignment:
Q  7 cattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||||| |||| |||||||||||||||||||||||||    
T  31430548 cattgtaattggccaatgtcacccaactctatgtcac 31430584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 42375120 - 42375156
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||| | ||||||||    
T  42375120 accaatgtcacccaactctatgtcacccaagtgctac 42375156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 53954720 - 53954756
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||||  ||||||||    
T  53954720 accaatgtcacccaactctatgtcacaaaagtgctac 53954756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 47677339 - 47677391
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgcta 53  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  47677339 ttgtgacattgtgattgatcaatgtcacccaactctatgtcacacaagtgcta 47677391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 43139760 - 43139701
Alignment:
Q  4 tgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctactccatttta 63  Q
    ||||||||||||||||| |||||||||||||||||||||| | |||||||| ||| ||||    
T  43139760 tgacattgtgattgaccgatgtcacccaactctatgtcactcaagtgctaccccacttta 43139701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29031798 - 29031859
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctactccatttta 63  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||| ||||||| |||||||||    
T  29031798 ttgtgacattgtaattgaccaatatcacctaactctatgtcacacaagtgcta-tccatttta 29031859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 49418742 - 49418692
Alignment:
Q  4 tgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||| ||||||||||||||||||| | ||||||||    
T  49418742 tgacattgtgattgaccaatatcacccaactctatgtcacccaagtgctac 49418692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18321735 - 18321776
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtca 42  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  18321735 ttgtgacattgtgattgaccaatgtcatccaactctatgtca 18321776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33689260 - 33689313
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||    
T  33689260 ttgtgacattgtgattggccaatgtcacccaactcaatgtcacccaagtgctac 33689313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 49414507 - 49414560
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||| |||| ||||||||||||||||||||||||| | ||||||||    
T  49414507 ttgtgacattgtaattggccaatgtcacccaactctatgtcacccaagtgctac 49414560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1801579 - 1801621
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  1801579 ttgtggcattgtgattggccaatgtcacccaactctatgtcac 1801621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29031768 - 29031727
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtca 42  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  29031768 ttgtgacattgtgattgaccaatatcacctaactctatgtca 29031727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39385772 - 39385813
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtca 42  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  39385772 ttgtaacattgtgattggccaatgtcacccaactctatgtca 39385813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30476528 - 30476476
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgcta 53  Q
    ||||||||||||||||| ||||||||||| | |||| |||||||| |||||||    
T  30476528 ttgtgacattgtgattggccaatgtcacctagctctctgtcacacaagtgcta 30476476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 27729290 - 27729321
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  27729290 ttgtgacattgtgattgaccaatgtcacccaa 27729321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30476558 - 30476595
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctat 38  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  30476558 ttgtgacattgtgattgaccaatgtcacataactctat 30476595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 45103137 - 45103096
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctactccat 59  Q
    |||||||||||||||||||||||||| | |||||||| ||||    
T  45103137 accaatgtcacccaactctatgtcacccaagtgctaccccat 45103096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 47677309 - 47677260
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtg 50  Q
    ||||||||||||||| |  |||||||||| ||||||||||||||| ||||    
T  47677309 ttgtgacattgtgatcggtcaatgtcaccaaactctatgtcacacaagtg 47677260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 1272559 - 1272595
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||| | ||||||||    
T  1272559 accaatgtcacccaactctatgtcacccaagtgctac 1272595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1801530 - 1801566
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactcta 37  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  1801530 ttgtggcattgtgattggccaatgtcacccaactcta 1801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 18321705 - 18321677
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacc 29  Q
    |||||||||||||||||||||||||||||    
T  18321705 ttgtgacattgtgattgaccaatgtcacc 18321677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 55223316 - 55223368
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgcta 53  Q
    |||||||||| |||||||||||| ||||  ||||||||||||| | |||||||    
T  55223316 ttgtgacattatgattgaccaatatcacttaactctatgtcacccaagtgcta 55223368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14464609 - 14464557
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgcta 53  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  14464609 ttgtgacattgtgattgaccaatgtcactcaactctatgtcacacaagtgcta 14464557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 2828635 - 2828585
Alignment:
Q  4 tgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||||||    
T  2828635 tgacattgtgattggccaatgtcacccaactctatgtcacagaagtgctac 2828585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2894017 - 2893975
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||||| |||||||||| |||||||||||||||||||||||||    
T  2894017 ttgtgagattgtgattggccaatgtcacccaactctatgtcac 2893975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2894047 - 2894089
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||||||| |||||||||||||||||| |||||||||||||||    
T  2894047 ttgtgacactgtgattgaccaatgtcatccaactctatgtcac 2894089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6217308 - 6217350
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  6217308 ttgtggcattgtgattggccaatgtcacccaactctatgtcac 6217350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15011364 - 15011406
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  15011364 ttgtgacattgtgattggccaatgtcactcaactctatgtcac 15011406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14229437 - 14229489
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| | ||||||||    
T  14229437 ttgtgacattgtgattg-ccaatgtcatccaactctatgtcacccaagtgctac 14229489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2828668 - 2828703
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactct 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2828668 ttgtgacattgtgattggccaatgtcacccaactct 2828703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 14470620 - 14470585
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgcta 53  Q
    |||||||||||||||||||||||||||| |||||||    
T  14470620 accaatgtcacccaactctatgtcacacaagtgcta 14470585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29925654 - 29925693
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgt 40  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  29925654 ttgtggcattgtgattggccaatgtcacccaactctatgt 29925693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38933641 - 38933599
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| |||||||||||  ||||||||||||||||||||||||    
T  38933641 ttgtggcattgtgattggtcaatgtcacccaactctatgtcac 38933599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 2143959 - 2144000
Alignment:
Q  4 tgacattgtgattgaccaatgtcacccaactctatgtcacac 45  Q
    |||||||||||||| |||| ||||| ||||||||||||||||    
T  2143959 tgacattgtgattggccaacgtcactcaactctatgtcacac 2144000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14229407 - 14229379
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacc 29  Q
    |||||||||||||||||||||||||||||    
T  14229407 ttgtgacattgtgattgaccaatgtcacc 14229379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 38933697 - 38933733
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||| | ||||||||    
T  38933697 accaatgtcacccaactctatgtcacccaagtgctac 38933733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4609080 - 4609124
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacac 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4609080 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacac 4609124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48823939 - 48823886
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | ||||||||    
T  48823939 ttgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtgctac 48823886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 47303479 - 47303523
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacac 45  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  47303479 ttgtgacattgtgattgaccaatgtcacctaactctatgtcacac 47303523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1819543 - 1819502
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtca 42  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  1819543 ttgtgacattgtgattgatcaatgtcacccaactctatgtca 1819502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9157394 - 9157454
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctactccatttt 62  Q
    |||||| ||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||    
T  9157394 ttgtgatattgtgattgatcaatgtcaaccaactctatgtcacacaagtgcta-tccatttt 9157454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46334000 - 46333947
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| | ||||||||    
T  46334000 ttgtgacattgtgattggccaatgtcatccaactctatgtcacccaagtgctac 46333947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 28928832 - 28928780
Alignment:
Q  2 tgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||| ||||||||||| ||||||||||||| | ||||||||    
T  28928832 tgtgacattgtgattggccaatgtcaccaaactctatgtcacccaagtgctac 28928780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 29371422 - 29371380
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  29371422 ttgtgacattgtgattggccaatgtcacctaactctatgtcac 29371380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34062263 - 34062221
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  34062263 ttgtggcattgtgattggccaatgtcacccaactctatgtcac 34062221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 49444995 - 49445037
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  49444995 ttgtggcattgtgattggccaatgtcacccaactctatgtcac 49445037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32157609 - 32157650
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtca 42  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  32157609 ttgtgacactgtgattgaccaatgtcaccaaactctatgtca 32157650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37155130 - 37155167
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctat 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  37155130 ttgtgacattgtgattggccaatgtcacccaactctat 37155167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48605001 - 48604964
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctat 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  48605001 ttgtgacattgtgattgaccaatgtcacctaactctat 48604964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15220865 - 15220813
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgcta 53  Q
    |||||| || ||||||||||||||||||||||||| ||||||| | |||||||    
T  15220865 ttgtgagatcgtgattgaccaatgtcacccaactccatgtcacccaagtgcta 15220813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 5694937 - 5694902
Alignment:
Q  8 attgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||||||||||||||||||||| |||||||||||||    
T  5694937 attgtgattgaccaatgtcaccaaactctatgtcac 5694902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34062293 - 34062332
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgt 40  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  34062293 ttgtgacattgtgattggtcaatgtcacccaactctatgt 34062332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 36290463 - 36290428
Alignment:
Q  7 cattgtgattgaccaatgtcacccaactctatgtca 42  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36290463 cattgtgattggccaatgtcacccaactctatgtca 36290428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8337905 - 8337864
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  8337905 ttgtgacattgtgattgaccaatgtca-ccaactctatatcac 8337864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8337935 - 8337977
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| |||||||||||  ||||||||||||||||||||||||    
T  8337935 ttgtggcattgtgattggtcaatgtcacccaactctatgtcac 8337977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19711234 - 19711192
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||| ||||||||||||  ||||||||||||||||||||||||    
T  19711234 ttgtaacattgtgattggtcaatgtcacccaactctatgtcac 19711192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38674559 - 38674517
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||    
T  38674559 ttgtgacattgtgattggccaatatcacccaactccatgtcac 38674517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38674587 - 38674629
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||||||||| |||||| ||||| |||||||||||||||||||    
T  38674587 ttgtgacattatgattggccaatatcacccaactctatgtcac 38674629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 46334030 - 46334072
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||||||||||||||||  |||||||| |||||||||||||||    
T  46334030 ttgtgacattgtgattggtcaatgtcatccaactctatgtcac 46334072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 9157338 - 9157306
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtg 50  Q
    |||||||||||||||||||||||||||| ||||    
T  9157338 accaatgtcacccaactctatgtcacacaagtg 9157306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 48993945 - 48993909
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||| | ||||||||    
T  48993945 accaatgtcacccaactctatgtcacccaagtgctac 48993909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 49444941 - 49444905
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||| | ||||||||    
T  49444941 accaatgtcacccaactctatgtcacccaagtgctac 49444905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34229725 - 34229778
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  34229725 ttgtgatattgtgattgaccaatgtcacctaactctatgtcacacaagtgctac 34229778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8243442 - 8243389
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||| |||||||||||| ||||||||| |||||||||||||| | ||||||||    
T  8243442 ttgtggcattgtgattgatcaatgtcactcaactctatgtcacccaagtgctac 8243389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 1880323 - 1880374
Alignment:
Q  2 tgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||| |||| |||||||||| | ||||||||    
T  1880323 tgtgacattgtgattgaccaatgtca-ccaattctatgtcacccaagtgctac 1880374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 36766215 - 36766176
Alignment:
Q  4 tgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  36766215 tgacgttgtgatcgaccaatgtcacccaactctatgtcac 36766176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 6296656 - 6296618
Alignment:
Q  4 tgacattgtgattgaccaatgtcacccaactctatgtca 42  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  6296656 tgacattgtgattggtcaatgtcacccaactctatgtca 6296618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39139845 - 39139887
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||||||||||||||||||||||||||| ||  |||||||||    
T  39139845 ttgtgacattgtgattgaccaatgtcaccaaatactatgtcac 39139887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34541857 - 34541804
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||| ||| |||||| |||||||||||||||| |||||||| | ||||||||    
T  34541857 ttgtgatattatgattggccaatgtcacccaactttatgtcacccaagtgctac 34541804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39851009 - 39850972
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctat 38  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  39851009 ttgtggcattgtgattggccaatgtcacccaactctat 39850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 5033271 - 5033307
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||| | ||||||||    
T  5033271 accaatgtcacccaactctatgtcacccaagtgctac 5033307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5667151 - 5667123
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacc 29  Q
    |||||||||||||||||||||||||||||    
T  5667151 ttgtgacattgtgattgaccaatgtcacc 5667123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 33841619 - 33841583
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||| | ||||||||    
T  33841619 accaatgtcacccaactctatgtcacccaagtgctac 33841583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 34229666 - 34229634
Alignment:
Q  21 aatgtcacccaactctatgtcacaccagtgcta 53  Q
    ||||||||||||||||||||||||| |||||||    
T  34229666 aatgtcacccaactctatgtcacacaagtgcta 34229634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 30165334 - 30165375
Alignment:
Q  4 tgacattgtgattgaccaatgtcacccaactctatgtcacac 45  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  30165334 tgacattgtgattgaccaatgtcacccaactctatatcacac 30165375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 4649368 - 4649332
Alignment:
Q  7 cattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||||||||||||||||||||||||||||||||||||    
T  4649368 cattgtgattgaccaatgtcacccaactctatgtcac 4649332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 4649408 - 4649448
Alignment:
Q  3 gtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  4649408 gtgacattgtgattgaccaatgtcaccaaactctatgtcac 4649448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27028847 - 27028795
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgcta 53  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| | |||||||    
T  27028847 ttgtgacattgtgattgtccaatgttacccaactctatgtcacccaagtgcta 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29053398 - 29053440
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  29053398 ttgtggcattgtgattggccaatgtcacccaactctatgtcac 29053440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 41018278 - 41018241
Alignment:
Q  5 gacattgtgattgaccaatgtcacccaactctatgtca 42  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  41018278 gacattgtgattggccaatgtcacccaactctatgtca 41018241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34854749 - 34854707
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||    
T  34854749 ttgtggcattgtgattggccaatgtcaccaaactctatgtcac 34854707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42628349 - 42628307
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| |||||||||||  ||||||||||||||||||||||||    
T  42628349 ttgtggcattgtgattggtcaatgtcacccaactctatgtcac 42628307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 11016979 - 11017015
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||| | ||||||||    
T  11016979 accaatgtcacccaactctatgtcacccaagtgctac 11017015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 25001399 - 25001359
Alignment:
Q  3 gtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||||||||||||| ||||||||||| |||||||| ||||    
T  25001399 gtgacattgtgattgtccaatgtcaccaaactctatttcac 25001359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27028877 - 27028905
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacc 29  Q
    |||||||||||||||||||||||||||||    
T  27028877 ttgtgacattgtgattgaccaatgtcacc 27028905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 29053362 - 29053326
Alignment:
Q  7 cattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  29053362 cattgtgattggccaatgtcaccaaactctatgtcac 29053326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 42628405 - 42628441
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||| | ||||||||    
T  42628405 accaatgtcacccaactctatgtcacccaagtgctac 42628441  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 45231902 - 45231866
Alignment:
Q  7 cattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    |||||||||||  ||||||||||||||||||||||||    
T  45231902 cattgtgattggtcaatgtcacccaactctatgtcac 45231866  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31654359 - 31654306
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgctac 54  Q
    ||||||||||||||||| |||||||||||||||||||| |||| | ||||||||    
T  31654359 ttgtgacattgtgattggccaatgtcacccaactctatatcacccaagtgctac 31654306  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10521903 - 10521851
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgcta 53  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| | |||||||    
T  10521903 ttgtgacattgtgattggccaatgtcaccaaactctatgtcacccaagtgcta 10521851  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 10521936 - 10521975
Alignment:
Q  4 tgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  10521936 tgacattgtgattgaccaatgtcactcaactctatgtcac 10521975  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 551219 - 551181
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatg 39  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  551219 ttgtggcattgtgattgaccaatgtcacccaactctatg 551181  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 12343154 - 12343112
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  12343154 ttgtggcattgtgattgactaatgtcacccaactctatgtcac 12343112  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24618685 - 24618737
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgcta 53  Q
    |||||||||||||||||  ||| |||||||||||||||||||| | |||||||    
T  24618685 ttgtgacattgtgattggtcaacgtcacccaactctatgtcacccaagtgcta 24618737  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2315358 - 2315325
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaact 34  Q
    |||||||||||||||||| |||||||||||||||    
T  2315358 ttgtgacattgtgattgatcaatgtcacccaact 2315325  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 17750956 - 17750928
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacc 29  Q
    |||||||||||||||||||||||||||||    
T  17750956 ttgtgacattgtgattgaccaatgtcacc 17750928  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 24618629 - 24618593
Alignment:
Q  18 accaatgtcacccaactctatgtcacaccagtgctac 54  Q
    |||||||||||||||||||||||||| | ||||||||    
T  24618629 accaatgtcacccaactctatgtcactcaagtgctac 24618593  T

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Target: scaffold1033 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2297 - 2349
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgcta 53  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||| |||||||    
T  2297 ttgtgacattgtgattgatcaatgtcgcccaattctatgtcacacaagtgcta 2349  T

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Target: scaffold1029 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2297 - 2349
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtgcta 53  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||| |||||||    
T  2297 ttgtgacattgtgattgatcaatgtcgcccaattctatgtcacacaagtgcta 2349  T

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Target: scaffold0047 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 63811 - 63769
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  63811 ttgtggcattgtgattggccaatgtcacccaactctatgtcac 63769  T

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Target: scaffold0047; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 63841 - 63883
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  63841 ttgtgacattgtgattggccaatgtcacccaactctatatcac 63883  T

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Target: scaffold0481 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2941 - 2892
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacaccagtg 50  Q
    |||||||||||||||||  |||| ||||||||||||||||||| ||||||    
T  2941 ttgtgacattgtgattggtcaatatcacccaactctatgtcaccccagtg 2892  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 49787 - 49829
Alignment:
Q  1 ttgtgacattgtgattgaccaatgtcacccaactctatgtcac 43  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||    
T  49787 ttgtggcattgtgattggccaatgtcacctaactctatgtcac 49829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 7075 - 7047
Alignment:
Q  18 accaatgtcacccaactctatgtcacacc 46  Q
    |||||||||||||||||||||||||||||    
T  7075 accaatgtcacccaactctatgtcacacc 7047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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