View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_low_7 (Length: 599)
Name: NF21014_low_7
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_low_7 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 155 - 583
Target Start/End: Original strand, 26227689 - 26228117
Alignment:
| Q |
155 |
tcatttgttaacccttcatcttcctctccttcgtgcttccccattcctcatcattatagtgcatccattccgaagattttgtggattgatttcactcaaa |
254 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| | |
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| T |
26227689 |
tcatttgttaacccttcatcttcctctccttcgtgcatccccattcctcatcattatagtgcatccattctgaagattttgtggatttatttccctcaga |
26227788 |
T |
|
| Q |
255 |
attttcaacttcccactaactcaagaaactatcatctcttttaacacatgtgacggttactgaatatggaaaatgaagggtttgtctcatcagtcacctt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26227789 |
attttcaacttcccactaactcaagaaactatcatctcttttaaaacacgtggcggttactgaatatggaaaatgaagggtttgtctcatcagtcacctt |
26227888 |
T |
|
| Q |
355 |
catcatttataaaaactcatttctctgttccttttgtgaaccagacttccatttctgtcttccatctcacagaactctcgctcttcttcctcctacaaaa |
454 |
Q |
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|||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
26227889 |
catcatttataaaaacccatttctctgtacctttcgtgaaccagttttccatttctgtcttccatcttacaaaactctcgctcttcttcctcctacaaaa |
26227988 |
T |
|
| Q |
455 |
gagagagaaaaaatctgaaaaatggacagacttccaggcgaactcctcaccaccattgttgaaaaagtagctgcctctagagtccaagacctctttaggt |
554 |
Q |
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|||||| | || ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
26227989 |
gagagaaataatatctgaaaaatggacggacttccagacgaactcctcaccaccattgttgaaaaagttgctgcctctggagtccaagacctctttaggt |
26228088 |
T |
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| Q |
555 |
ttaaagcaacataagttcgtcaacaaaag |
583 |
Q |
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| T |
26228089 |
ttaaagcaacataagttcgtcaccaaaag |
26228117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 26227582 - 26227475
Alignment:
| Q |
1 |
atgacgtcattctcctaagaatacatgaagtattttcaaaatttccaattttcgtcttcatattttttctagtcgaaaatgacatttttaggtgcaattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26227582 |
atgacgtcattctcctaagaatacatgaagtattttcaaaaatgccaatttttgtcttcatattttttctagtcgaaaatgacatttttaggagcaattt |
26227483 |
T |
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| Q |
101 |
gttggcct |
108 |
Q |
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|||||||| |
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| T |
26227482 |
gttggcct |
26227475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 153 - 418
Target Start/End: Original strand, 7474491 - 7474760
Alignment:
| Q |
153 |
tgtcatttgttaacccttcatcttcctctccttcgtgcttccccattcctcatcattatagtgcatccattccgaagattttgtggattgatttcactca |
252 |
Q |
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| T |
7474491 |
tgtcatttgttaacccttcatcttcattaccttcgcatttccccattcatcatcatcatagcacctcttatctgaagattttgtcgatttgtttccctcg |
7474590 |
T |
|
| Q |
253 |
aaattttcaactt-cccactaactcaagaaactatca---tctcttttaacacatgtgacggttactgaatatggaaaatgaagggtttgtctcatcagt |
348 |
Q |
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| | ||||||||| |||||||||||||||||| | || |||| ||||| ||| ||||||| |||||||| |||||||| ||||||| ||||||| |
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| T |
7474591 |
agactttcaactttcccactaactcaagaaaccaccaccctctcatttaagacacacagcggttaccgaatatgggaaatgaagtgtttgtcacatcagt |
7474690 |
T |
|
| Q |
349 |
caccttcatcatttataaaaactcatttctctgttccttttgtgaaccagacttccatttctgtcttcca |
418 |
Q |
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| T |
7474691 |
taccttcatcatttataaaaacccattttcctgctctttttgtgaaacatctttccatttctgtcttcca |
7474760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 18214447 - 18214400
Alignment:
| Q |
322 |
ggaaaatgaagggtttgtctcatcagtcaccttcatcatttataaaaa |
369 |
Q |
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| T |
18214447 |
ggaaaatgaagcgtttgtcccatcagttaccttcatcatttataaaaa |
18214400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 357
Target Start/End: Original strand, 23761 - 23857
Alignment:
| Q |
261 |
aacttcccactaactcaagaaactatcatctcttttaacacatgtgacggttactgaatatggaaaatgaag-ggtttgtctcatcagtcaccttcat |
357 |
Q |
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|||||||||||| ||||| ||||| |||| || ||||||| ||||| | ||||| ||| | ||||||||||| | ||||||| |||| |||||||||| |
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| T |
23761 |
aacttcccactatctcaa-aaactgtcatttcctttaacaaatgtggcagttaccgaaaagggaaaatgaagagttttgtcttatcaatcaccttcat |
23857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 28760090 - 28760046
Alignment:
| Q |
113 |
aaaatttagtggggtcttttcattgccctaggacaccaaatgtca |
157 |
Q |
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|||| |||||||||||||| |||||||||||| |||||| ||||| |
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| T |
28760090 |
aaaagttagtggggtctttccattgccctagggcaccaagtgtca |
28760046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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