View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21014_low_8 (Length: 595)
Name: NF21014_low_8
Description: NF21014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21014_low_8 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0514 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 96 - 595
Target Start/End: Original strand, 22796608 - 22797107
Alignment:
| Q |
96 |
gtgcgggttgcagacaaactagggattagagtgtttgcacccgtatccatatccattcaaatttgtaggtaaatacccgagctaaagcccgaactcgtta |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22796608 |
gtgcgggttgcagacaaactagggattagagtgtttgcacccgtatccatatccatttaaatttgtaggtaaatacccgagctgaagcccgaactcgtta |
22796707 |
T |
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| Q |
196 |
atgcatatgtatttacctcactcattgtaagtatttttggtgtatgcctaatagggttgggtctaattgttttccctaataatatctaactgccttgata |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |
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| T |
22796708 |
atgcatatgtatttacctcactcattgtaagtatttttggtgtatgcctaatagggttgggtttaattgttttccctaataatatctaactaccttaata |
22796807 |
T |
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| Q |
296 |
gagtttcaatttactccaaaattacttattgaaaggtatttgcaatacacagttgagagatggttaaaggtaagatttttcatttcatatgtggcagatt |
395 |
Q |
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||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22796808 |
gagtttcaagttactccaaaaatactaattgaaaggtatttgcaatacacagttgagagatggttaaaggtaagatttttcatttcatatgtggcagatt |
22796907 |
T |
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| Q |
396 |
gagatttgagggttttgaaatgttaatgtctaacaagagaatttgaacgcgtgtgacagaaatcatctgatgcagttcttgaaacggttataatttgaaa |
495 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22796908 |
gagatttgcgggttttgaaatgttaatgtctaacaagagaatttgaacgagtgtgacagaaatcatctgatgcagttcttgaaacggttataatttgaaa |
22797007 |
T |
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| Q |
496 |
ccagagatttttacaaagatgttaagtgttaactacccaccgtttaaattcttattataggagcggtttttggaaactaaatcccagatatcatatcttt |
595 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
22797008 |
ccagagatttttacaaagatgttaagtgttaactatccaccggttaaattcttattataggagggggttttggaaactaaatcccagatatcatatcttt |
22797107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 6594977 - 6594932
Alignment:
| Q |
334 |
tttgcaatacacagttgagagatggttaaaggtaagatttttcatt |
379 |
Q |
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|||| ||||||||||||||| | |||||||||||||||||||||| |
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| T |
6594977 |
tttgaaatacacagttgagaagttgttaaaggtaagatttttcatt |
6594932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 6618029 - 6617989
Alignment:
| Q |
339 |
aatacacagttgagagatggttaaaggtaagatttttcatt |
379 |
Q |
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||||||| |||||||| ||||||||||||||||||||||| |
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| T |
6618029 |
aatacacggttgagaggcggttaaaggtaagatttttcatt |
6617989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0514
Description:
Target: scaffold0514; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 2010 - 2050
Alignment:
| Q |
339 |
aatacacagttgagagatggttaaaggtaagatttttcatt |
379 |
Q |
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| T |
2010 |
aatacacagttgagaagttgttaaaggtaagatttttcatt |
2050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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