View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21015_high_2 (Length: 451)
Name: NF21015_high_2
Description: NF21015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21015_high_2 |
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| [»] scaffold0568 (4 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 2631 - 2505
Alignment:
| Q |
120 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccacaccaaaccaagcc |
219 |
Q |
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| T |
2631 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccgcaccaaacccagcc |
2532 |
T |
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| Q |
220 |
cccaaccacaccaacacgtgctgaacc |
246 |
Q |
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| T |
2531 |
cccaagcacaccaacacgtgctgaacc |
2505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 9233 - 9107
Alignment:
| Q |
120 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccacaccaaaccaagcc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
9233 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccgcaccaaacccagcc |
9134 |
T |
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| Q |
220 |
cccaaccacaccaacacgtgctgaacc |
246 |
Q |
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| T |
9133 |
cccaagcacaccaacacgtgctgaacc |
9107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 309 - 432
Target Start/End: Complemental strand, 2442 - 2319
Alignment:
| Q |
309 |
cgcccctaacagaaggcagcacccaccaaaacagcaaacagaacctgcgaacacnnnnnnntcagaacctgtcaaaattttacaattataaccacatttt |
408 |
Q |
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| T |
2442 |
cgcccctaacagaaggcagcacccaccaaaacagcaaacagaacctgcgaacacaaaaaaaccagaacctgtcaaaattttgcaattataaccacatttt |
2343 |
T |
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| Q |
409 |
tgggagatatatttgggtcaaata |
432 |
Q |
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| T |
2342 |
tgggagttatatttgggtcaaata |
2319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 309 - 432
Target Start/End: Complemental strand, 9044 - 8921
Alignment:
| Q |
309 |
cgcccctaacagaaggcagcacccaccaaaacagcaaacagaacctgcgaacacnnnnnnntcagaacctgtcaaaattttacaattataaccacatttt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
9044 |
cgcccctaacagaaggcagcacccaccaaaacagcaaacagaacctgcgaacacaaaaaaaccagaacctgtcaaaattttgcaattataaccacatttt |
8945 |
T |
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| Q |
409 |
tgggagatatatttgggtcaaata |
432 |
Q |
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|||||| ||||||||||||||||| |
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| T |
8944 |
tgggagttatatttgggtcaaata |
8921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 17060655 - 17060530
Alignment:
| Q |
120 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccacaccaaaccaagcc |
219 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17060655 |
gtgactgatgcaaaggtatacaaagacccaaaa-ctatccggaaaggcagccagacaagaacaatgaccccctatgcataacaccgcaccaaaccaagcc |
17060557 |
T |
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| Q |
220 |
cccaaccacaccaacacgtgctgaacc |
246 |
Q |
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||||||||||||||||||||||||||| |
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| T |
17060556 |
cccaaccacaccaacacgtgctgaacc |
17060530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 311 - 432
Target Start/End: Complemental strand, 17060464 - 17060343
Alignment:
| Q |
311 |
cccctaacagaaggcagcacccaccaaaacagcaaacagaacctgcgaacacnnnnnnntcagaacctgtcaaaattttacaattataaccacatttttg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||||||||||| |
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| T |
17060464 |
cccctaacagaaggcagcacccaccaaaacagcaaacagaacctgcgaacacaaaaaaaccataaccggtcaaaattttgcaattataaccacatttttg |
17060365 |
T |
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| Q |
411 |
ggagatatatttgggtcaaata |
432 |
Q |
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|||||||||||||||||||||| |
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| T |
17060364 |
ggagatatatttgggtcaaata |
17060343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 17060760 - 17060725
Alignment:
| Q |
15 |
cacagacaagggtgtcgtatataggcggaacacctg |
50 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
17060760 |
cacaaacaagggtgtcgtatataggcggaacacctg |
17060725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 48224123 - 48223997
Alignment:
| Q |
120 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccacaccaaaccaagcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||| |
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| T |
48224123 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctacgcataacgccgcaccaaacccagcc |
48224024 |
T |
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| Q |
220 |
cccaaccacaccaacacgtgctgaacc |
246 |
Q |
| |
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||||| ||||||||||||||||||||| |
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| T |
48224023 |
cccaagcacaccaacacgtgctgaacc |
48223997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 48223926 - 48223874
Alignment:
| Q |
309 |
cgcccctaacagaaggcagcacccaccaaaacagcaaacagaacctgcgaaca |
361 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48223926 |
cgcccttaacagaaggcagcacccaccaaaacagcaaacagaacctgcgaaca |
48223874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 29158189 - 29158147
Alignment:
| Q |
391 |
caattataaccacatttttgggagatatatttgggtcaaatat |
433 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
29158189 |
caattatagccacatttctgggagatatatttgggtcaaatat |
29158147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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