View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21015_low_1 (Length: 526)

Name: NF21015_low_1
Description: NF21015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21015_low_1
NF21015_low_1
[»] chr6 (19 HSPs)
chr6 (13-451)||(34786266-34786704)
chr6 (442-526)||(34786763-34786847)
chr6 (166-242)||(13227127-13227199)
chr6 (197-254)||(6776603-6776660)
chr6 (197-254)||(33549127-33549184)
chr6 (197-254)||(12188299-12188356)
chr6 (197-254)||(12234503-12234560)
chr6 (162-254)||(6758387-6758475)
chr6 (199-254)||(21418493-21418548)
chr6 (200-254)||(30127423-30127477)
chr6 (198-254)||(12216767-12216823)
chr6 (198-254)||(32613137-32613193)
chr6 (199-254)||(24641188-24641243)
chr6 (211-254)||(31623001-31623044)
chr6 (197-254)||(3715475-3715532)
chr6 (201-254)||(10338174-10338227)
chr6 (197-254)||(32201881-32201938)
chr6 (197-253)||(12633033-12633089)
chr6 (189-253)||(16405109-16405173)
[»] chr2 (22 HSPs)
chr2 (255-308)||(6537429-6537482)
chr2 (198-254)||(26545863-26545919)
chr2 (197-246)||(25637182-25637231)
chr2 (198-254)||(42327392-42327448)
chr2 (310-345)||(24128521-24128556)
chr2 (199-254)||(39715015-39715070)
chr2 (204-254)||(37755974-37756024)
chr2 (197-254)||(42602577-42602634)
chr2 (197-253)||(4262298-4262354)
chr2 (202-254)||(28846714-28846766)
chr2 (201-253)||(42860372-42860424)
chr2 (199-254)||(19016054-19016109)
chr2 (199-254)||(21213792-21213847)
chr2 (469-524)||(24128285-24128340)
chr2 (199-254)||(29503294-29503349)
chr2 (199-254)||(37480098-37480153)
chr2 (197-254)||(42922437-42922495)
chr2 (197-254)||(7799031-7799088)
chr2 (201-254)||(12994376-12994429)
chr2 (197-254)||(16918574-16918631)
chr2 (199-248)||(40791488-40791537)
chr2 (197-253)||(6859308-6859364)
[»] scaffold1367 (1 HSPs)
scaffold1367 (197-254)||(836-893)
[»] scaffold0299 (1 HSPs)
scaffold0299 (197-254)||(11551-11608)
[»] chr4 (38 HSPs)
chr4 (189-254)||(13015450-13015515)
chr4 (199-250)||(39509097-39509148)
chr4 (197-250)||(2185028-2185081)
chr4 (197-254)||(7292794-7292851)
chr4 (197-254)||(37109347-37109404)
chr4 (201-254)||(38869791-38869844)
chr4 (197-249)||(8306513-8306565)
chr4 (197-253)||(23377980-23378036)
chr4 (197-245)||(40813314-40813362)
chr4 (197-252)||(2622391-2622446)
chr4 (162-254)||(7949419-7949507)
chr4 (199-254)||(30938217-30938272)
chr4 (199-254)||(55427198-55427253)
chr4 (200-254)||(41346962-41347016)
chr4 (197-254)||(21660140-21660197)
chr4 (197-254)||(21668904-21668961)
chr4 (201-254)||(51250522-51250575)
chr4 (199-251)||(32992638-32992690)
chr4 (199-254)||(19238575-19238630)
chr4 (197-252)||(37274455-37274510)
chr4 (198-253)||(43623441-43623496)
chr4 (199-254)||(47044740-47044795)
chr4 (197-243)||(7539624-7539670)
chr4 (204-254)||(9241028-9241078)
chr4 (196-254)||(24234668-24234726)
chr4 (197-247)||(28635726-28635776)
chr4 (201-254)||(8030204-8030257)
chr4 (197-254)||(9543194-9543251)
chr4 (197-254)||(12798707-12798764)
chr4 (205-254)||(17618304-17618353)
chr4 (196-253)||(20770935-20770992)
chr4 (201-254)||(31826632-31826685)
chr4 (197-254)||(49576890-49576947)
chr4 (197-254)||(53496900-53496957)
chr4 (197-253)||(12793907-12793963)
chr4 (199-235)||(15729524-15729560)
chr4 (197-257)||(42644906-42644966)
chr4 (202-238)||(43479626-43479662)
[»] chr1 (35 HSPs)
chr1 (198-256)||(15786317-15786375)
chr1 (199-247)||(12259290-12259338)
chr1 (197-254)||(8177178-8177235)
chr1 (197-254)||(9165191-9165248)
chr1 (197-254)||(33700769-33700826)
chr1 (197-254)||(51703802-51703859)
chr1 (197-253)||(12587294-12587350)
chr1 (196-252)||(50901607-50901663)
chr1 (197-256)||(8904435-8904494)
chr1 (199-254)||(17410254-17410309)
chr1 (200-254)||(40257422-40257476)
chr1 (197-254)||(2799885-2799942)
chr1 (197-254)||(6650618-6650675)
chr1 (197-254)||(17745252-17745309)
chr1 (197-253)||(18037609-18037665)
chr1 (198-254)||(31383795-31383851)
chr1 (197-248)||(12370192-12370243)
chr1 (199-254)||(19528325-19528380)
chr1 (199-254)||(24047100-24047155)
chr1 (200-254)||(9117142-9117196)
chr1 (197-243)||(17439951-17439997)
chr1 (204-254)||(21184391-21184441)
chr1 (224-254)||(44046171-44046201)
chr1 (224-254)||(52336797-52336827)
chr1 (198-235)||(7219915-7219952)
chr1 (197-254)||(10526846-10526903)
chr1 (197-254)||(16893417-16893474)
chr1 (197-254)||(21547476-21547533)
chr1 (197-254)||(27476767-27476824)
chr1 (197-254)||(36371493-36371550)
chr1 (197-254)||(51814517-51814574)
chr1 (199-251)||(952537-952589)
chr1 (197-253)||(4566572-4566628)
chr1 (199-251)||(31605846-31605898)
chr1 (199-251)||(39714777-39714828)
[»] scaffold0258 (1 HSPs)
scaffold0258 (197-254)||(15319-15376)
[»] chr8 (24 HSPs)
chr8 (197-254)||(968385-968442)
chr8 (198-254)||(11492070-11492126)
chr8 (199-254)||(16852363-16852418)
chr8 (197-253)||(34628666-34628722)
chr8 (203-254)||(5801070-5801121)
chr8 (192-254)||(30483875-30483937)
chr8 (197-254)||(3624603-3624660)
chr8 (197-254)||(7140732-7140789)
chr8 (197-250)||(27871695-27871748)
chr8 (201-254)||(29858049-29858102)
chr8 (197-254)||(35641897-35641954)
chr8 (197-254)||(35690060-35690117)
chr8 (197-256)||(3305184-3305243)
chr8 (198-253)||(6569768-6569823)
chr8 (189-224)||(9271557-9271592)
chr8 (199-254)||(19703485-19703540)
chr8 (199-254)||(28783083-28783138)
chr8 (199-253)||(36205219-36205273)
chr8 (197-254)||(6536543-6536600)
chr8 (197-254)||(18540321-18540378)
chr8 (197-254)||(23361645-23361702)
chr8 (198-254)||(29431034-29431090)
chr8 (197-253)||(31087254-31087310)
chr8 (197-253)||(33017238-33017294)
[»] chr5 (24 HSPs)
chr5 (197-254)||(29075804-29075861)
chr5 (199-250)||(84851-84902)
chr5 (199-253)||(41165627-41165681)
chr5 (197-254)||(16773830-16773887)
chr5 (197-254)||(21549133-21549190)
chr5 (197-254)||(22020858-22020915)
chr5 (199-254)||(30883196-30883251)
chr5 (197-254)||(14495801-14495858)
chr5 (197-254)||(29692382-29692439)
chr5 (197-254)||(43442219-43442276)
chr5 (198-254)||(1410657-1410712)
chr5 (197-252)||(14285186-14285241)
chr5 (197-252)||(36958118-36958173)
chr5 (197-254)||(8278271-8278328)
chr5 (197-246)||(12883871-12883920)
chr5 (201-254)||(21589311-21589364)
chr5 (197-254)||(25627080-25627137)
chr5 (201-254)||(30109308-30109361)
chr5 (197-254)||(34984829-34984886)
chr5 (197-254)||(37258362-37258419)
chr5 (211-255)||(4793098-4793142)
chr5 (197-253)||(14804666-14804722)
chr5 (198-254)||(17761352-17761408)
chr5 (197-253)||(25979194-25979250)
[»] chr3 (38 HSPs)
chr3 (197-254)||(4222164-4222221)
chr3 (197-254)||(51903874-51903931)
chr3 (197-252)||(10445135-10445190)
chr3 (197-254)||(2667885-2667942)
chr3 (197-254)||(4844507-4844564)
chr3 (197-254)||(4870203-4870260)
chr3 (197-254)||(29563923-29563980)
chr3 (197-254)||(36720404-36720461)
chr3 (197-250)||(44743851-44743904)
chr3 (198-254)||(30311329-30311385)
chr3 (199-254)||(14339633-14339688)
chr3 (195-254)||(21960574-21960633)
chr3 (197-252)||(31520601-31520656)
chr3 (197-256)||(40063640-40063699)
chr3 (199-254)||(47454615-47454670)
chr3 (203-257)||(9557340-9557394)
chr3 (197-254)||(10499105-10499162)
chr3 (197-250)||(30510195-30510248)
chr3 (197-238)||(36010781-36010822)
chr3 (197-254)||(46518651-46518708)
chr3 (197-254)||(47860779-47860835)
chr3 (197-253)||(27259185-27259241)
chr3 (197-253)||(28703400-28703456)
chr3 (218-253)||(31788987-31789022)
chr3 (197-251)||(31608520-31608574)
chr3 (197-247)||(39253727-39253777)
chr3 (198-244)||(52769980-52770026)
chr3 (201-254)||(8051237-8051290)
chr3 (200-253)||(11090164-11090217)
chr3 (197-254)||(15048057-15048114)
chr3 (200-253)||(26411569-26411622)
chr3 (213-254)||(28531070-28531111)
chr3 (197-254)||(32651434-32651491)
chr3 (197-246)||(37051290-37051339)
chr3 (197-246)||(47824146-47824195)
chr3 (197-253)||(13808881-13808937)
chr3 (210-254)||(28928888-28928932)
chr3 (202-254)||(47279405-47279457)
[»] chr7 (36 HSPs)
chr7 (206-253)||(26703149-26703196)
chr7 (197-247)||(3174957-3175007)
chr7 (197-254)||(2446331-2446388)
chr7 (197-254)||(26459406-26459463)
chr7 (197-249)||(9871282-9871334)
chr7 (196-252)||(17041007-17041063)
chr7 (197-253)||(23552142-23552198)
chr7 (202-254)||(48771961-48772013)
chr7 (199-254)||(20335829-20335884)
chr7 (197-254)||(7309378-7309436)
chr7 (197-254)||(43215207-43215264)
chr7 (197-254)||(45709704-45709761)
chr7 (202-254)||(25590634-25590686)
chr7 (211-254)||(21854571-21854614)
chr7 (199-254)||(22760886-22760941)
chr7 (211-254)||(25021345-25021388)
chr7 (198-253)||(30217903-30217958)
chr7 (197-256)||(33869441-33869500)
chr7 (199-254)||(37085547-37085602)
chr7 (199-254)||(43590930-43590985)
chr7 (197-259)||(5668567-5668629)
chr7 (201-251)||(5934147-5934197)
chr7 (202-244)||(21410711-21410753)
chr7 (189-251)||(22035424-22035486)
chr7 (200-254)||(29785300-29785354)
chr7 (197-247)||(37162346-37162396)
chr7 (192-254)||(39631867-39631929)
chr7 (197-254)||(7721392-7721449)
chr7 (197-254)||(9608625-9608682)
chr7 (197-254)||(9836197-9836254)
chr7 (197-254)||(17113818-17113875)
chr7 (197-241)||(9183187-9183231)
chr7 (198-254)||(23301599-23301655)
chr7 (206-254)||(28236586-28236634)
chr7 (198-254)||(30442511-30442567)
chr7 (199-255)||(49050489-49050545)
[»] scaffold0009 (2 HSPs)
scaffold0009 (200-254)||(19846-19900)
scaffold0009 (201-253)||(145913-145965)
[»] scaffold0194 (1 HSPs)
scaffold0194 (197-254)||(13042-13099)
[»] scaffold0021 (2 HSPs)
scaffold0021 (197-254)||(106071-106128)
scaffold0021 (218-254)||(157004-157040)
[»] scaffold0417 (1 HSPs)
scaffold0417 (196-253)||(10243-10300)
[»] scaffold0291 (1 HSPs)
scaffold0291 (199-254)||(2468-2523)
[»] scaffold0180 (1 HSPs)
scaffold0180 (197-254)||(19958-20015)
[»] scaffold0126 (1 HSPs)
scaffold0126 (197-254)||(25343-25400)
[»] scaffold0118 (1 HSPs)
scaffold0118 (197-254)||(41629-41686)
[»] scaffold0008 (1 HSPs)
scaffold0008 (197-254)||(49329-49386)
[»] scaffold0070 (1 HSPs)
scaffold0070 (198-254)||(42517-42573)
[»] scaffold0047 (1 HSPs)
scaffold0047 (197-253)||(14968-15023)


Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 451
Target Start/End: Original strand, 34786266 - 34786704
Alignment:
Q  13 agcacagaaccggacacacaaaaccaccactgccgactggaatcaaaccacaggttgaaccaacacgacagctccaaccacacaccaaaaaagtaactga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34786266 agcacagaaccggacacacaaaaccaccactgccgactggaatcaaaccacaggttgaaccaacacgacagctccaaccacacacctaaaaagtaactga 34786365  T
Q  113 agtnnnnnnnnntgcaggacactacaaaccaataccagcggagccaccaaagctaaattggcccacctaaactgactgacacatgagagaatcgaacttg 212  Q
    |||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34786366 agtaagaaaaaatgcaggacactacaaaccaataccagcggagccaccaaagctaaattggcccacctaaactgactgacacatgagagaatcgaacttg 34786465  T
Q  213 agacttcgagaaggagcacactcccagatcccaagccaatactatatatcataaagttattgtattacatcaaactataacaaattttgcagaagataag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34786466 agacttcgagaaggagcacactcccagatcccaagccaatactatatatcataaagttattgtattacatcaaactataacaaattttgcagaagataag 34786565  T
Q  313 tgtcatgaatcgcaatatccatctaattcctcatagaagacactgaaaacagatttgtcccataaaggaaatttactttaaatccatccnnnnnnnctag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||       ||||    
T  34786566 tgtcatgaatcgcaatatccatctaattcctcatagaagacaccgaaaacagatttgtcccataaaagaaatttactttaaatccatccaaaaaaactag 34786665  T
Q  413 atcactttagttgtttatgagattttaagtgttttggaa 451  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34786666 atcactttagttgtttatgagattttaagtgttttggaa 34786704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 442 - 526
Target Start/End: Complemental strand, 34786847 - 34786763
Alignment:
Q  442 tgttttggaatcttgttcccggaatccttttcaacaaagactttaggttgttatccgaaaaactcgtgcaacgccttccggtttt 526  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34786847 tgttatggaatcttgttcccggaatccttttcaacaaagactttaggttgttatccgaaaaactcgtgcaacgccttccggtttt 34786763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 13227127 - 13227199
Alignment:
Q  166 taaattggcccacctaaactgactgacacatgagagaatcgaacttgagacttcgagaaggagcacactcccagatc 242  Q
    |||||||||||||||||||||||    | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  13227127 taaattggcccacctaaactgac----atatgagagaatcgaacttgagacttcgaggaggagcacactcccagatc 13227199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 6776603 - 6776660
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||| |||||||||| ||||| |||||||||| ||||||||||||||||||||    
T  6776603 gagagaatcaaacttgagacatcgaggaggagcacacccccagatcccaagccaatac 6776660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 33549184 - 33549127
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||    
T  33549184 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 33549127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 12188299 - 12188356
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||||||| || | ||| |||||||||||||||| ||||||||||||||    
T  12188299 gagagaatcgaacttgaaaccttgaggaggagcacactcccaggtcccaagccaatac 12188356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 12234503 - 12234560
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| |||||| ||||||||||||||| ||||||| ||||||    
T  12234503 gagagaatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaatac 12234560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 6758387 - 6758475
Alignment:
Q  162 aagctaaattggcccacctaaactgactgacacatgagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||| ||||||||||| ||||    ||  ||||||||||| |||||||| |||||  |||||||||||||| |||| ||||||||||    
T  6758387 aagctaaatttgcccacctaaattgac----accagagagaatcgatcttgagacctcgaggtggagcacactcccaaatcctaagccaatac 6758475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 21418548 - 21418493
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||||||| | ||| |||||||||||||||  ||||||||||||||    
T  21418548 gagaatcgaacttgagacatggaggaggagcacactcccaagtcccaagccaatac 21418493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 30127477 - 30127423
Alignment:
Q  200 agaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||| |||||| ||||  ||||||||||||||||| |||||||||||||    
T  30127477 agaatcgaacctgagacctcgaagaggagcacactcccagaccccaagccaatac 30127423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 12216823 - 12216767
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||| |||||| ||||||||||||||| || ||| |||||| |||||||    
T  12216823 agagaatcgaacctgagacctcgagaaggagcacattcgcaggtcccaaaccaatac 12216767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 32613137 - 32613193
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||| |||||  | ||||||||||||||||||||| |||||| ||||||    
T  32613137 agagaatcgaacatgagatcttgagaaggagcacactcccagaccccaagtcaatac 32613193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 24641188 - 24641243
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| | | || ||||| |||||||||||||||||||||||| ||||||    
T  24641188 gagaatcgaaccttaaacctcgaggaggagcacactcccagatcccaagtcaatac 24641243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 31623001 - 31623044
Alignment:
Q  211 tgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||| ||||| |||||||||||||||| ||||||||||||||    
T  31623001 tgagacctcgaggaggagcacactcccaggtcccaagccaatac 31623044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 3715532 - 3715475
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||||||||| ||||  || |||| ||||||||||| |||| ||||||    
T  3715532 gagagaatcgaacttgagacctcgacgagaagcatactcccagatctcaagtcaatac 3715475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 10338174 - 10338227
Alignment:
Q  201 gaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||| |||||| | ||| ||||||||||||| || ||||||||||||||    
T  10338174 gaatcgaacctgagaccttgaggaggagcacactcctaggtcccaagccaatac 10338227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 32201881 - 32201938
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||| |||||||||||| ||||  || ||||||||||||  |||||||||||||||||    
T  32201881 gagataatcgaacttgaaacttaaaggaggagcacactctgagatcccaagccaatac 32201938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 12633089 - 12633033
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||| |||||  ||||  ||||||||||||||| |||||||| |||||    
T  12633089 gagagaatcgaacatgagatctcgaagaggagcacactcccaaatcccaagtcaata 12633033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 16405173 - 16405109
Alignment:
Q  189 tgacacatgagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||| | ||||||||||  |||||| ||||| || ||||||||||||| |||||| ||||||    
T  16405173 tgacacaggtgagaatcgaaactgagacctcgaggagaagcacactcccaggtcccaaaccaata 16405109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 6537429 - 6537482
Alignment:
Q  255 tatatatcataaagttattgtattacatcaaactataacaaattttgcagaaga 308  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6537429 tatatatcataaagttattgtattacatcaaactataacacattttgcagaaga 6537482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 26545919 - 26545863
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  26545919 agagaatcaaacttgagacctcgagaaggagcacacttccagatcccaagctaatac 26545863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 25637231 - 25637182
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaa 246  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||||||    
T  25637231 gagagaaccgaacctgagacctcgagaaggagcacactcccagatcccaa 25637182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 42327392 - 42327448
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||| |||||| | ||| |||||||||||||||| ||||||||||||||    
T  42327392 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 42327448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 345
Target Start/End: Complemental strand, 24128556 - 24128521
Alignment:
Q  310 aagtgtcatgaatcgcaatatccatctaattcctca 345  Q
    ||||||||||||||||||||||||||||||||||||    
T  24128556 aagtgtcatgaatcgcaatatccatctaattcctca 24128521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 39715070 - 39715015
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| ||||| |||||||||||||||| ||||||| ||||||    
T  39715070 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaatac 39715015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 37755974 - 37756024
Alignment:
Q  204 tcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| ||||| ||||||||| |||||| ||||||||||||||    
T  37755974 tcgaacttgagacctcgagtaggagcacattcccaggtcccaagccaatac 37756024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 42602634 - 42602577
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||| ||| | |||| | |||||||||||||||||||| ||||||||||||||    
T  42602634 gagagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaatac 42602577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 4262298 - 4262354
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||| |||||| | ||| ||||||||||| |||| |||||||||||||    
T  4262298 gagagaatcgaacctgagaccttgaggaggagcacactgccaggtcccaagccaata 4262354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 28846766 - 28846714
Alignment:
Q  202 aatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||| |||||| ||||| |||||||||||||||| ||||||| ||||||    
T  28846766 aatcgaacctgagacatcgaggaggagcacactcccaggtcccaagtcaatac 28846714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 42860424 - 42860372
Alignment:
Q  201 gaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    |||||||||||||||| ||||| |||||||||||||||| || |||| |||||    
T  42860424 gaatcgaacttgagacctcgaggaggagcacactcccaggtctcaagtcaata 42860372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 19016109 - 19016054
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||| |||||||||| ||||| |||||||||||||||  || |||||||||||    
T  19016109 gagaatcaaacttgagacctcgaggaggagcacactcccaagtctcaagccaatac 19016054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 21213847 - 21213792
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| || || |||| ||||||||||| ||||||||||||||    
T  21213847 gagaatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaatac 21213792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 524
Target Start/End: Original strand, 24128285 - 24128340
Alignment:
Q  469 ttttcaacaaagactttaggttgttatccgaaaaactcgtgcaacgccttccggtt 524  Q
    |||||| ||||| |||  |||||||||||| ||||||||||||| |||||||||||    
T  24128285 ttttcaccaaagccttccggttgttatccggaaaactcgtgcaatgccttccggtt 24128340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 29503349 - 29503294
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| | ||| |||||||||||||||| |||||| |||||||    
T  29503349 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaatac 29503294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 37480153 - 37480098
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| | ||| |||||||||||| ||| ||||||||||||||    
T  37480153 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaatac 37480098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 42922495 - 42922437
Alignment:
Q  197 gagagaatcgaacttgagac-ttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| || ||| |||||||||||||||| | ||||||||||||    
T  42922495 gagagaatcgaacctgagacctttgaggaggagcacactcccaggttccaagccaatac 42922437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 7799031 - 7799088
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||  |||||  ||||| |||||||||||||||  ||||||||||||||    
T  7799031 gagagaatcgaatctgagatctcgaggaggagcacactcccaagtcccaagccaatac 7799088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 12994376 - 12994429
Alignment:
Q  201 gaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||||| |  || |||||||||||||||| ||||||| ||||||    
T  12994376 gaatcgaacttgagaccttaaggaggagcacactcccaggtcccaagtcaatac 12994429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 16918574 - 16918631
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||| ||| | |||| | ||| ||||||||||||||||||||||| |||||||    
T  16918574 gagagaatccaacctaagaccttgaggaggagcacactcccagatcccaaaccaatac 16918631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 40791488 - 40791537
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagc 248  Q
    |||||||||||||||||| | |||||||||||||||| || ||| |||||    
T  40791488 gagaatcgaacttgagaccttgagaaggagcacactctcaaatctcaagc 40791537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 6859308 - 6859364
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||| |||||||| ||  ||||||||||||||| ||| |||| |||||    
T  6859308 gagagaatcgaacctgagactttgaagaggagcacactcccatatcacaagtcaata 6859364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 836 - 893
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||    
T  836 gagagaatcgaacctgagacttcgaggaggagcacattcccagatcccaagccaatac 893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 11608 - 11551
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  11608 gagagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaatac 11551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 13015515 - 13015450
Alignment:
Q  189 tgacacatgagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||| |||||||||||||| |||||||||||| |||||||||||||||  ||||||||||||||    
T  13015515 tgacacctgagagaatcgaacatgagacttcgaggaggagcacactcccaagtcccaagccaatac 13015450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 39509148 - 39509097
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagcca 250  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  39509148 gagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagcca 39509097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 2185028 - 2185081
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagcca 250  Q
    ||||||||||||| |||||||| |||||||||||||||||||| | ||||||||    
T  2185028 gagagaatcgaacctgagactttgagaaggagcacactcccaggttccaagcca 2185081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 7292794 - 7292851
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||||| ||| |||||||||||||||| | ||||||||||||    
T  7292794 gagagaatcgaacctgagactttgaggaggagcacactcccaggttccaagccaatac 7292851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 37109347 - 37109404
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| |||||||||||||||| ||||||||||||||    
T  37109347 gagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 37109404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 38869844 - 38869791
Alignment:
Q  201 gaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||| |||||| | ||| |||||||||||||||||||||||||||||||    
T  38869844 gaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatac 38869791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 8306565 - 8306513
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagcc 249  Q
    ||||||||||||||| |||||||||| |||||||||||||||| || ||||||    
T  8306565 gagagaatcgaacttaagacttcgaggaggagcacactcccaggtctcaagcc 8306513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 23378036 - 23377980
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||| |||||| | ||| |||||||||||||||| |||||||||||||    
T  23378036 gagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaata 23377980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 40813314 - 40813362
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatccca 245  Q
    ||||| ||||||| ||||||||||| |||||||||||||||||||||||    
T  40813314 gagagtatcgaacctgagacttcgaaaaggagcacactcccagatccca 40813362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 2622391 - 2622446
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaat 252  Q
    ||||||||||||| |||||| | ||| |||||||||||||||| ||||||||||||    
T  2622391 gagagaatcgaacctgagacatggaggaggagcacactcccaggtcccaagccaat 2622446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 7949419 - 7949507
Alignment:
Q  162 aagctaaattggcccacctaaactgactgacacatgagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||| ||||||||||| ||||    ||  ||||||||||||| |||||| | ||| ||||||||||||| || ||||||||||||||    
T  7949419 aagctaaattagcccacctaaattgac----accagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatac 7949507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 30938217 - 30938272
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| ||||| ||||||||||||| ||||||||| |||||||    
T  30938217 gagaatcgaacctgagacctcgaggaggagcacactccaagatcccaaaccaatac 30938272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 55427198 - 55427253
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| ||||| ||||||| |||||||| ||||||||||||||    
T  55427198 gagaatcgaacctgagacctcgagcaggagcagactcccaggtcccaagccaatac 55427253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 41346962 - 41347016
Alignment:
Q  200 agaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||| |||||||||||| ||||||| ||||||||||| ||| |||||||    
T  41346962 agaatcgaacctgagacttcgaggaggagcatactcccagatctcaaaccaatac 41347016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 21660140 - 21660197
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||| ||||||||||||||| ||||| | ||||||||||||||||| |||| ||||||    
T  21660140 gagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaatac 21660197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 21668904 - 21668961
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||| ||||||||||||||| ||||| | ||||||||||||||||| |||| ||||||    
T  21668904 gagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaatac 21668961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 51250522 - 51250575
Alignment:
Q  201 gaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||||  | |||  ||||||||||||||||||||||||||||||    
T  51250522 gaatcgaacttgagatcttgaggcggagcacactcccagatcccaagccaatac 51250575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 32992690 - 32992638
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaa 251  Q
    |||||||||||||||||| | ||| ||||||||||||| || |||||||||||    
T  32992690 gagaatcgaacttgagaccttgaggaggagcacactccaaggtcccaagccaa 32992638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 19238575 - 19238630
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||  ||||| ||||| |||||||||||||||  ||||||||||||||    
T  19238575 gagaatcgaacccgagacctcgaggaggagcacactcccaagtcccaagccaatac 19238630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 37274455 - 37274510
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaat 252  Q
    ||||||||||||| | |||| | ||| |||||||||||||||| ||||||||||||    
T  37274455 gagagaatcgaacctaagaccttgaggaggagcacactcccaggtcccaagccaat 37274510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 43623441 - 43623496
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    |||||||||||| ||||||||| || |||||||||||||| |||| |||| |||||    
T  43623441 agagaatcgaacctgagacttcaaggaggagcacactccctgatctcaagtcaata 43623496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 47044795 - 47044740
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| ||||| ||||||| |||| ||||||||||| ||||||    
T  47044795 gagaatcgaacctgagacctcgaggaggagcaaactctcagatcccaagtcaatac 47044740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 7539670 - 7539624
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcc 243  Q
    ||||||||||||| |||||| | ||||||||||| ||||||||||||    
T  7539670 gagagaatcgaacctgagaccttgagaaggagcatactcccagatcc 7539624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 9241028 - 9241078
Alignment:
Q  204 tcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||| | |||| ||||| ||||||||||| |||||||||||||||||||    
T  9241028 tcgaacctcagacctcgagcaggagcacactaccagatcccaagccaatac 9241078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 24234726 - 24234668
Alignment:
Q  196 tgagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||||||||||| |  || | |||||||||||||  ||||||||||||||    
T  24234726 tgagagaatcgaacttgagaccttcaggatgagcacactcccaagtcccaagccaatac 24234668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 28635776 - 28635726
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaag 247  Q
    ||||||||||||| | |||| || || ||||||||||||||||||||||||    
T  28635776 gagagaatcgaacctaagacctccaggaggagcacactcccagatcccaag 28635726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 8030204 - 8030257
Alignment:
Q  201 gaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||||| | ||| |||||||||||||||  ||||||||| ||||    
T  8030204 gaatcgaacttgagaccttgaggaggagcacactcccaagtcccaagcctatac 8030257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 9543251 - 9543194
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||| ||||||||| |||||| ||||||||  |||||| |||||| ||||    
T  9543251 gagagaatcgaatttgagactttgagaagaagcacactatcagatctcaagccgatac 9543194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 12798764 - 12798707
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| ||| || ||||| || |||||||||||||||| ||| |||||||    
T  12798764 gagagaatcgaacctgaaacctcgaggagcagcacactcccagatctcaaaccaatac 12798707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 17618353 - 17618304
Alignment:
Q  205 cgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||| |||||| ||||| |||||||||||||||| || |||||||||||    
T  17618353 cgaacatgagacctcgaggaggagcacactcccaggtctcaagccaatac 17618304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 20770992 - 20770935
Alignment:
Q  196 tgagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||||||||||| | |||||||| |||||  ||||||  ||||||||||    
T  20770992 tgagagaatcgaacttgagaccttgagaaggaacacacatccagatttcaagccaata 20770935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 31826685 - 31826632
Alignment:
Q  201 gaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||||| | ||| |||||||||||| || |||||||||| ||||    
T  31826685 gaatcgaacttgagaccttgaggaggagcacactcgcaaatcccaagcctatac 31826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 49576890 - 49576947
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| |||||||||||||||  ||| ||||||||||    
T  49576890 gagagaatcgaacctgagaccttgaggaggagcacactcccaagtccaaagccaatac 49576947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 53496957 - 53496900
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||| ||  |||||||| ||| |||||||||||||||| |||||| |||||||    
T  53496957 gagagaatcaaatctgagactttgaggaggagcacactcccaggtcccaaaccaatac 53496900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 12793907 - 12793963
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||||| | |||||| | | |||||||||| ||||||| |||||||||    
T  12793907 gagagaatcgaacttaatacttcgtggaagagcacactcacagatccgaagccaata 12793963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 15729560 - 15729524
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactc 235  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  15729560 gagaatcgaacttgagacatcgaggaggagcacactc 15729524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 42644906 - 42644966
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatactat 257  Q
    |||| |||||||| |||||||| ||| | || ||||||| ||||||||||| |||||||||    
T  42644906 gagataatcgaacctgagactttgaggaagaacacactctcagatcccaagtcaatactat 42644966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 43479626 - 43479662
Alignment:
Q  202 aatcgaacttgagacttcgagaaggagcacactccca 238  Q
    |||||||||| | ||||||||||||||||||||||||    
T  43479626 aatcgaacttaatacttcgagaaggagcacactccca 43479662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 15786317 - 15786375
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatacta 256  Q
    |||||||||||| |||||| | ||| |||||||||||||||||||||||||||||||||    
T  15786317 agagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatacta 15786375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 12259338 - 12259290
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaag 247  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  12259338 gagaatcgaacttgagacttcgaggaggagcacactcccaaatcccaag 12259290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 8177178 - 8177235
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| ||| || | ||| |||||||||||||||||||||||||||||||    
T  8177178 gagagaatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaatac 8177235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 9165191 - 9165248
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||| |||| |||||||| ||| |||||||||||||||| ||||||||||||||    
T  9165191 gagagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaatac 9165248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 33700769 - 33700826
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| |||||||||||||||||| ||||||||||||    
T  33700769 gagagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaatac 33700826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 51703859 - 51703802
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| ||| |||| ||| |||||||||||||||||| ||||||||||||    
T  51703859 gagagaatcgaacctgaaactttgaggaggagcacactcccagattccaagccaatac 51703802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 12587350 - 12587294
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||| |||||| ||||| |||||||||||| ||||||||||| |||||    
T  12587350 gagagaatcgaacctgagacctcgaggaggagcacactcacagatcccaagtcaata 12587294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 50901663 - 50901607
Alignment:
Q  196 tgagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaat 252  Q
    ||||||||||||| ||||||| ||||| ||||||||||| |||| ||||||||||||    
T  50901663 tgagagaatcgaatttgagacctcgaggaggagcacactaccaggtcccaagccaat 50901607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 8904494 - 8904435
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatacta 256  Q
    |||||||||||||||||||| | ||| |||||||||||| || |||||||| ||||||||    
T  8904494 gagagaatcgaacttgagaccttgaggaggagcacactcacatatcccaagtcaatacta 8904435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 17410309 - 17410254
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||||||  ||||| |||| |||||||||||||||||| |||||||    
T  17410309 gagaatcgaacttgagatctcgaggaggaccacactcccagatcccaaaccaatac 17410254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 40257476 - 40257422
Alignment:
Q  200 agaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||| ||||||||||| ||||| |||||||||||||||| || |||||||||||    
T  40257476 agaattgaacttgagacctcgaggaggagcacactcccaggtctcaagccaatac 40257422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 2799942 - 2799885
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| ||||||||||||||||||| |||||| ||||    
T  2799942 gagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagcctatac 2799885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 6650675 - 6650618
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| ||||||| |||||| ||||||||||||||||    
T  6650675 gagagaatcgaacctgagacattgaggaggagcatactccccgatcccaagccaatac 6650618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 17745252 - 17745309
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| ||||| |||||||||| | ||| ||||||||||||||    
T  17745252 gagagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaatac 17745309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 18037609 - 18037665
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    |||||||||||||||||||  |||| ||||||||||||||||  |||||| ||||||    
T  18037609 gagagaatcgaacttgagatctcgaaaaggagcacactcccaagtcccaaaccaata 18037665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 31383795 - 31383851
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||| ||||||  | || |||||||||||||||| ||||||||||||||    
T  31383795 agagaatcgaacctgagaccccaaggaggagcacactcccaggtcccaagccaatac 31383851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 12370243 - 12370192
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagc 248  Q
    ||||||||| ||| |||||| ||||| |||||||||||||||| ||||||||    
T  12370243 gagagaatcaaacatgagacctcgaggaggagcacactcccaggtcccaagc 12370192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 19528325 - 19528380
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| | ||| ||||||||||||  |||||||||||||||||    
T  19528325 gagaatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaatac 19528380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 24047100 - 24047155
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||||| || ||||| |||||||||||||||  || |||||||||||    
T  24047100 gagaatcgaacttgaaacctcgaggaggagcacactcccaagtctcaagccaatac 24047155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 9117196 - 9117142
Alignment:
Q  200 agaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||| |||||| || || ||||||||||| |||||||||||||| ||||    
T  9117196 agaatcgaacctgagacctcaaggaggagcacacttccagatcccaagcccatac 9117142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 17439997 - 17439951
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcc 243  Q
    ||||||||| ||| |||||| ||||| ||||||||||||||||||||    
T  17439997 gagagaatcaaacatgagacctcgaggaggagcacactcccagatcc 17439951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 21184391 - 21184441
Alignment:
Q  204 tcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |  ||||||||||||||| ||| ||||||||||||||    
T  21184391 tcgaacttgagaccttcagaaggagcacactcgcaggtcccaagccaatac 21184441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 254
Target Start/End: Original strand, 44046171 - 44046201
Alignment:
Q  224 aggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||||||||||||||||||||    
T  44046171 aggagcacactcccagatcccaagccaatac 44046201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 254
Target Start/End: Original strand, 52336797 - 52336827
Alignment:
Q  224 aggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||||||||||||||||||||    
T  52336797 aggagcacactcccagatcccaagccaatac 52336827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 7219915 - 7219952
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactc 235  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  7219915 agagaatcgaacctgagacttcgaggaggagcacactc 7219952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 10526903 - 10526846
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||  |||||| | ||| ||||||| |||||||| ||||||||||||||    
T  10526903 gagagaatcgaatctgagaccttgaggaggagcaaactcccaggtcccaagccaatac 10526846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 16893474 - 16893417
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||| |||||||| |||||| ||||| ||||| ||||||||| ||| |||||||||||    
T  16893474 gagaaaatcgaacctgagacctcgaggaggagtacactcccaaatctcaagccaatac 16893417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 21547476 - 21547533
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| ||| || ||||| |||||||| ||||||  ||||||||||||||    
T  21547476 gagagaatcgaacctgaaacctcgaggaggagcaccctcccatgtcccaagccaatac 21547533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 27476767 - 27476824
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||| |||||||||  ||||| ||||||||||||| |  ||||||||||||||    
T  27476767 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatac 27476824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 36371550 - 36371493
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| | |||| | ||| |||||||||||||||| | ||||||||||||    
T  36371550 gagagaatcgaacctcagaccttgaggaggagcacactcccaggttccaagccaatac 36371493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 51814574 - 51814517
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| |||||||||||| |||||| |||| ||||||    
T  51814574 gagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaatac 51814517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 952589 - 952537
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaa 251  Q
    ||||||| ||| |||||||| ||| | |||||||||||||| |||||||||||    
T  952589 gagaatctaacctgagactttgaggatgagcacactcccaggtcccaagccaa 952537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 4566628 - 4566572
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||| ||||||   ||| |||||||||||||||| | |||||||||||    
T  4566628 gagagaatcgaacctgagaccctgaggaggagcacactcccaggttccaagccaata 4566572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 31605846 - 31605898
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaa 251  Q
    |||||||||||||||||| | ||| ||||||||||| | || |||||||||||    
T  31605846 gagaatcgaacttgagaccttgaggaggagcacacttcaaggtcccaagccaa 31605898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 39714777 - 39714828
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaa 251  Q
    ||||||| |||||||||| | |||| |||||||||||| ||||||||||||||    
T  39714777 gagaatcaaacttgagaccttgaga-ggagcacactccaagatcccaagccaa 39714828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 15319 - 15376
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||    
T  15319 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 15376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 968442 - 968385
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||    
T  968442 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 968385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 11492070 - 11492126
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||| | |||| ||||||||||||||||||||||||| |||||||||||    
T  11492070 agagaatcgaacctaagacctcgagaaggagcacactcccagatctcaagccaatac 11492126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 16852418 - 16852363
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||    
T  16852418 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 16852363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 34628722 - 34628666
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||| |||||||| ||| || | |||||||||||||||||||||||||    
T  34628722 gagagaatcgaacctgagactttgaggagaaacacactcccagatcccaagccaata 34628666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 5801121 - 5801070
Alignment:
Q  203 atcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||| |||||    
T  5801121 atcgaacttgagacgtcgagacggagcacactcctagatcccaagctaatac 5801070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 30483875 - 30483937
Alignment:
Q  192 cacatgagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||| |||||||| |||| |||||||  ||| ||||||||||||||| |||||||||||||||    
T  30483875 cacaagagagaattgaacctgagactctgaggaggagcacactcccatatcccaagccaatac 30483937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 3624660 - 3624603
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||  |||||||||||||||| ||||||||||||||    
T  3624660 gagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaatac 3624603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 7140789 - 7140732
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||  |||||  ||||| |||||||||| ||||||||||||||||||||    
T  7140789 gagagaatcgaatctgagagctcgaggaggagcacacacccagatcccaagccaatac 7140732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 27871748 - 27871695
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagcca 250  Q
    |||||||||||||||||||||| ||| |||| || ||||| |||||||||||||    
T  27871748 gagagaatcgaacttgagactttgaggaggaacaaactccaagatcccaagcca 27871695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 29858049 - 29858102
Alignment:
Q  201 gaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||| |||||| ||||| |||||||||||||| | ||||||||||||||    
T  29858049 gaatcgaacctgagacctcgaggaggagcacactccctggtcccaagccaatac 29858102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 35641897 - 35641954
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| ||||| ||||||||||||||| ||| |||||| ||||    
T  35641897 gagagaatcgaacctgagacatcgaggaggagcacactcccaaatctcaagccgatac 35641954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 35690060 - 35690117
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| ||||||| || ||||||||||||||||||||    
T  35690060 gagagaatcgaacctgagaccttgaggaggagcaaacacccagatcccaagccaatac 35690117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 3305184 - 3305243
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatacta 256  Q
    |||| ||||||| ||||||| | ||| |||||||| |||||||||||||| |||||||||    
T  3305184 gagataatcgaatttgagaccttgaggaggagcacgctcccagatcccaaaccaatacta 3305243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 6569768 - 6569823
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    |||||||||||| ||| || |  || ||||||||||||||||||||||||||||||    
T  6569768 agagaatcgaacatgaaacctaaaggaggagcacactcccagatcccaagccaata 6569823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 9271557 - 9271592
Alignment:
Q  189 tgacacatgagagaatcgaacttgagacttcgagaa 224  Q
    |||||||||||||||||||||||||||||| |||||    
T  9271557 tgacacatgagagaatcgaacttgagactttgagaa 9271592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 19703485 - 19703540
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| | ||| |||||||||||| ||| ||||||||||||||    
T  19703485 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaatac 19703540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 28783138 - 28783083
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| | ||| |||||||||||||||| || |||||||||||    
T  28783138 gagaatcgaacatgagaccttgaggaggagcacactcccaggtctcaagccaatac 28783083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 36205273 - 36205219
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||| |||||| | ||| ||||||||||||||||||| ||| ||||||    
T  36205273 gagaatcgaacatgagaccttgaggaggagcacactcccagatctcaaaccaata 36205219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 6536600 - 6536543
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||| |||| |||||| | ||| ||||||||||||| || ||||||||||||||    
T  6536600 gagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaatac 6536543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 18540378 - 18540321
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| || || |||||||||| ||||||||||||||    
T  18540378 gagagaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaatac 18540321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 23361645 - 23361702
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||| |||| |||||| | ||| ||||||||||||||| |||||||| ||||||    
T  23361645 gagagaattgaacctgagaccttgaggaggagcacactcccatatcccaagtcaatac 23361702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 29431090 - 29431034
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||| |||| | || || |||||||||||||||  ||||||||||||||    
T  29431090 agagaatcgaacctgaggcctcaaggaggagcacactcccaagtcccaagccaatac 29431034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 31087254 - 31087310
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    |||| |||||||| |||||| ||||| ||| | | ||||||||||||||||||||||    
T  31087254 gagataatcgaacctgagacctcgaggagggggatactcccagatcccaagccaata 31087310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 33017294 - 33017238
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||| |||||| | ||| ||||||||||| |||| | |||||||||||    
T  33017294 gagagaatcgaacctgagaccttgaggaggagcacacttccaggttccaagccaata 33017238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 29075861 - 29075804
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||    
T  29075861 gagagaatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaatac 29075804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 84902 - 84851
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagcca 250  Q
    |||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  84902 gagaatcgaacttgagaccttgaggaggagcacactcccagatcccaagcca 84851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 41165627 - 41165681
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||| ||||    
T  41165627 gagaatcgaatctaagacttcgagaaggagcacactcccagatcccaagctaata 41165681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 16773887 - 16773830
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| ||||| |||||||||||||||| ||||||| ||||||    
T  16773887 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaatac 16773830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 21549133 - 21549190
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||| |||||||||||||||||  || |||||||||||||||| ||||||||||||||    
T  21549133 gagaaaatcgaacttgagactttaaggaggagcacactcccaggtcccaagccaatac 21549190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 22020858 - 22020915
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||  ||||||||| || ||||||||||||||||||||||||| |||||    
T  22020858 gagagaatcgaatctgagacttcaaggaggagcacactcccagatcccaagctaatac 22020915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 30883196 - 30883251
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||| ||||||||||| | ||| |||||||||||||||| ||||||||||||||    
T  30883196 gagaattgaacttgagaccttgaggaggagcacactcccaggtcccaagccaatac 30883251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 14495801 - 14495858
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||| ||  |||||| ||||| |||||||||||||||||||||||| ||||||    
T  14495801 gagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaatac 14495858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 29692382 - 29692439
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||  ||| |||||||| ||| ||||||||||||||||||||||| |||||||    
T  29692382 gagagaattaaacctgagactttgaggaggagcacactcccagatcccaatccaatac 29692439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 43442276 - 43442219
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| ||||||||||||||||||| ||| |||||||    
T  43442276 gagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaaaccaatac 43442219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 1410657 - 1410712
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| ||||| ||||| ||||||||||||||| |||||||| ||||||    
T  1410657 agagaatcgaact-gagacctcgaggaggagcacactcccatatcccaagtcaatac 1410712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 14285241 - 14285186
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaat 252  Q
    ||||||||||||| |||||| | ||| |||||||||||||||| | ||||||||||    
T  14285241 gagagaatcgaacctgagaccttgaggaggagcacactcccaggttccaagccaat 14285186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 36958118 - 36958173
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaat 252  Q
    ||||||||||||| |||||||||||  |||| |||||||||| ||| |||||||||    
T  36958118 gagagaatcgaacctgagacttcgatgaggaacacactcccaaatctcaagccaat 36958173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 8278271 - 8278328
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||| |||| |||||||||  ||||| |||||||||||||||  ||||||||||||||    
T  8278271 gagataatcaaacttgagatctcgaggaggagcacactcccaagtcccaagccaatac 8278328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 12883920 - 12883871
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaa 246  Q
    |||||||| |||| |||||| || || |||||||||||||||||||||||    
T  12883920 gagagaattgaacatgagacctcaaggaggagcacactcccagatcccaa 12883871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 21589364 - 21589311
Alignment:
Q  201 gaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||| |||||| ||||| || |||| |||||||| ||||||||||||||    
T  21589364 gaatcgaacctgagacatcgaggagtagcagactcccaggtcccaagccaatac 21589311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 25627137 - 25627080
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| |||||||||||||||  | ||||||||||||    
T  25627137 gagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaatac 25627080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 30109308 - 30109361
Alignment:
Q  201 gaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||| |||||| || || |||||||||||||||| || |||||||||||    
T  30109308 gaatcgaacctgagacctcaaggaggagcacactcccaggtcacaagccaatac 30109361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 34984886 - 34984829
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| | |||| | ||| |||||||||||||||| | ||||||||||||    
T  34984886 gagagaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaatac 34984829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 37258362 - 37258419
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| ||| || | ||| ||||||||||||| ||||||||||| |||||    
T  37258362 gagagaatcgaacctgaaaccttgaggaggagcacactcctagatcccaagctaatac 37258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 4793098 - 4793142
Alignment:
Q  211 tgagacttcgagaaggagcacactcccagatcccaagccaatact 255  Q
    |||||| ||||| |||||||||||||||| |||||| ||||||||    
T  4793098 tgagacctcgaggaggagcacactcccaggtcccaaaccaatact 4793142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 14804666 - 14804722
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||| | |||||| |||||||| ||||||| || ||||||| ||||||    
T  14804666 gagagaatcgaacctaagacttagagaaggaacacactcacaaatcccaaaccaata 14804722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 17761352 - 17761408
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||| | | | ||||| || |||||||||||||||||||||||||| ||||    
T  17761352 agagaatcgatcctaaaacttcaaggaggagcacactcccagatcccaagccgatac 17761408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 25979250 - 25979194
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||| |||||| | ||| ||||| ||||||||| || |||||||||||    
T  25979250 gagagaatcgaacctgagaccttgaggaggagaacactcccaaattccaagccaata 25979194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 4222221 - 4222164
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| | |||||| ||| |||||||||||||||||||||||||||||||    
T  4222221 gagagaatcgaacctaagactttgaggaggagcacactcccagatcccaagccaatac 4222164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 51903874 - 51903931
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| ||||||  |||| |||||||||||||||||||||||||||||||    
T  51903874 gagagaatcgaacctgagaccacgaggaggagcacactcccagatcccaagccaatac 51903931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 10445135 - 10445190
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaat 252  Q
    ||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||    
T  10445135 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaat 10445190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 2667942 - 2667885
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||| |||||||| |||||| ||||| | |||||||||||||||||||||||||||||    
T  2667942 gagataatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaatac 2667885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 4844507 - 4844564
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| | |||||| ||||| |||||||||||||||||||||||| ||||||    
T  4844507 gagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaatac 4844564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 4870203 - 4870260
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| | |||||| ||||| |||||||||||||||||||||||| ||||||    
T  4870203 gagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaatac 4870260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 29563980 - 29563923
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||||||||| || |||||||| ||||||| |||||||||||    
T  29563980 gagagaatcgaacctgagacttcgaggagaagcacacttccagatctcaagccaatac 29563923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 36720461 - 36720404
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| ||| || ||||| ||||||||||||||| |||||||||||||||    
T  36720461 gagagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaatac 36720404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 44743851 - 44743904
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagcca 250  Q
    |||| |||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  44743851 gagataatcgaacctgagacctcgaggaggagcacactcccagatcccaagcca 44743904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 30311385 - 30311329
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||| |||||| | ||| |||||||||||||||||||||||||| ||||    
T  30311385 agagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagcctatac 30311329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 14339688 - 14339633
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| | ||| ||||||||||||||| |||||||||||||||    
T  14339688 gagaatcgaacctgagacattgaggaggagcacactcccaaatcccaagccaatac 14339633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 21960633 - 21960574
Alignment:
Q  195 atgagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||||  |||||| ||||| |||||||||||| ||| ||||||||||||||    
T  21960633 atgagagaatcgaatctgagacctcgaggaggagcacactctcaggtcccaagccaatac 21960574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 31520601 - 31520656
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaat 252  Q
    ||||||||| ||| | |||| ||||| |||||||||||||||||||||||||||||    
T  31520601 gagagaatcaaacctaagacctcgaggaggagcacactcccagatcccaagccaat 31520656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 40063699 - 40063640
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatacta 256  Q
    |||||||||||||||||||| |  || ||||||| |||| ||||||||||||||||||||    
T  40063699 gagagaatcgaacttgagaccttaaggaggagcatactctcagatcccaagccaatacta 40063640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 47454615 - 47454670
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| ||||| ||||||||||||| ||||| |||||||||||    
T  47454615 gagaatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaatac 47454670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 9557394 - 9557340
Alignment:
Q  203 atcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatactat 257  Q
    ||||||| |||||  ||||| |||||||||||| |||||||||||||||||||||    
T  9557394 atcgaacctgagatctcgaggaggagcacactctcagatcccaagccaatactat 9557340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 10499105 - 10499162
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| || || | ||||| |||||||||||||||||||||||    
T  10499105 gagagaatcgaacctgagacctcaaggaagagcagactcccagatcccaagccaatac 10499162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 30510195 - 30510248
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagcca 250  Q
    ||||||||||||| |||||| ||||||||||||| ||||| || ||||||||||    
T  30510195 gagagaatcgaacctgagacctcgagaaggagcatactcctaggtcccaagcca 30510248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 36010822 - 36010781
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactccca 238  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  36010822 gagagaatcgaacttgagactttgaggaggagcacactccca 36010781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 46518708 - 46518651
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||| ||| ||| || | ||| |||||||||||||||||||||||||||||||    
T  46518708 gagagaatcaaacctgaaaccttgaggaggagcacactcccagatcccaagccaatac 46518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 47860835 - 47860779
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||| ||||||| ||| ||||||||||||| |||||| ||||||||||    
T  47860835 gagagaatcgaact-gagactttgaggaggagcacactcctagatccaaagccaatac 47860779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 27259241 - 27259185
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||| ||| ||| || ||||| |||||||||||||||| |||||||||||||    
T  27259241 gagagaatcaaacctgaaacctcgaggaggagcacactcccaggtcccaagccaata 27259185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 28703400 - 28703456
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||| |||||| | ||  ||||||||||||||||||||||||| ||||    
T  28703400 gagagaatcgaacctgagaccttgaagaggagcacactcccagatcccaagctaata 28703456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 253
Target Start/End: Original strand, 31788987 - 31789022
Alignment:
Q  218 tcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||| ||||||||||||||||||||||||||||||    
T  31788987 tcgaggaggagcacactcccagatcccaagccaata 31789022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 31608520 - 31608574
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaa 251  Q
    ||||||||| ||  |||||| ||||| ||||||||||||||||||| ||||||||    
T  31608520 gagagaatcaaatctgagacctcgaggaggagcacactcccagatctcaagccaa 31608574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 39253777 - 39253727
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaag 247  Q
    ||||||||||||| |||||| | ||  ||||||||||||||||||||||||    
T  39253777 gagagaatcgaacctgagaccttgaagaggagcacactcccagatcccaag 39253727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 52769980 - 52770026
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatccc 244  Q
    |||||||||||| |||||| || || |||||||||||||||||||||    
T  52769980 agagaatcgaacctgagacctcaaggaggagcacactcccagatccc 52770026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 8051290 - 8051237
Alignment:
Q  201 gaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||||| ||||| || |||| ||| |||| ||||||||||||||    
T  8051290 gaatcgaacttgagacctcgaggagaagcatactgccaggtcccaagccaatac 8051237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 11090164 - 11090217
Alignment:
Q  200 agaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    |||||||||  | |||| ||||| ||||||||| ||||||||||||||||||||    
T  11090164 agaatcgaaactaagacctcgaggaggagcacattcccagatcccaagccaata 11090217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 15048057 - 15048114
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||| |||||||| |||||| | ||| ||||||||| |||||||||||||||| ||||    
T  15048057 gagataatcgaacctgagaccttgaggaggagcacattcccagatcccaagcctatac 15048114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 26411622 - 26411569
Alignment:
Q  200 agaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    |||||||||||||| || | |||||||||||||||| ||| ||||||| |||||    
T  26411622 agaatcgaacttgaaacattgagaaggagcacactctcaggtcccaagtcaata 26411569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 28531070 - 28531111
Alignment:
Q  213 agacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||| ||||| ||||||| |||||||||||||||||||||||    
T  28531070 agacctcgaggaggagcatactcccagatcccaagccaatac 28531111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 32651434 - 32651491
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||  |||||  | ||| |||||||||||||||| ||||||||||||||    
T  32651434 gagagaatcgaatctgagatcttgaggaggagcacactcccaggtcccaagccaatac 32651491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 37051290 - 37051339
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaa 246  Q
    ||||||||||||| ||||||||  || |||| ||||||||||||||||||    
T  37051290 gagagaatcgaacctgagactttaaggaggaacacactcccagatcccaa 37051339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 47824195 - 47824146
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaa 246  Q
    |||||||||||||| ||||||| ||| ||||| |||||| ||||||||||    
T  47824195 gagagaatcgaactagagactttgaggaggagtacactctcagatcccaa 47824146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 13808881 - 13808937
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    |||||||| |||| |||||| | ||| ||||||||||| |||||||||||| |||||    
T  13808881 gagagaattgaacctgagacctagaggaggagcacactgccagatcccaagtcaata 13808937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 28928888 - 28928932
Alignment:
Q  210 ttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||| || ||| |||||||||||| ||||||||||||||||||    
T  28928888 ttgagaatttgaggaggagcacactctcagatcccaagccaatac 28928932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 47279405 - 47279457
Alignment:
Q  202 aatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||| |||||| |  || ||||||||||||||||||||||||| |||||    
T  47279405 aatcgaacatgagaccttaaggaggagcacactcccagatcccaagcaaatac 47279457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 26703196 - 26703149
Alignment:
Q  206 gaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||    
T  26703196 gaacctgagacctcgagaaggagcacactcccagatcccaagccaata 26703149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 3175007 - 3174957
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaag 247  Q
    ||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  3175007 gagagaatcgaacctgagacctcgagatggagcacactcccagatcccaag 3174957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 2446388 - 2446331
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||||||||  ||||| |||||||||||||||  ||||||||||||||    
T  2446388 gagagaatcgaacttgagatctcgaggaggagcacactcccaagtcccaagccaatac 2446331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 26459406 - 26459463
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| |||||||||||||||| ||||||||||||||    
T  26459406 gagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 26459463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 9871282 - 9871334
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagcc 249  Q
    ||||||||||||  |||||||||||| ||||||||||||||| ||||||||||    
T  9871282 gagagaatcgaatctgagacttcgaggaggagcacactcccaaatcccaagcc 9871334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 17041007 - 17041063
Alignment:
Q  196 tgagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaat 252  Q
    |||||||||||||| |||||| | ||| ||||||||||| |||||||||||||||||    
T  17041007 tgagagaatcgaacctgagaccttgaggaggagcacacttccagatcccaagccaat 17041063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 23552198 - 23552142
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    |||||||||||||||||||| | ||| |||||||||||||||| ||||||| |||||    
T  23552198 gagagaatcgaacttgagaccttgaggaggagcacactcccaggtcccaagtcaata 23552142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 48772013 - 48771961
Alignment:
Q  202 aatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||| |||||| || || |||||||||||||||||||||||||||||||    
T  48772013 aatcgaacctgagacctcaaggaggagcacactcccagatcccaagccaatac 48771961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 20335829 - 20335884
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| ||||| |||||||||||||||  ||||||||||||||    
T  20335829 gagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatac 20335884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 7309436 - 7309378
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacact-cccagatcccaagccaatac 254  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||| ||||||| |||||    
T  7309436 gagagaatcgaacttgagacctcgaggaggagcacactccccagaccccaagctaatac 7309378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 43215264 - 43215207
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| ||||||||||||| || ||||||||||||||    
T  43215264 gagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatac 43215207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 45709704 - 45709761
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||| |||||||| |||||| ||||| |||||||||||| |||||||||||| |||||    
T  45709704 gagataatcgaacctgagacctcgaggaggagcacactctcagatcccaagctaatac 45709761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 25590686 - 25590634
Alignment:
Q  202 aatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||  ||||| ||||| ||||||||||||||||||| |||||||||||    
T  25590686 aatcgaacccgagacctcgaggaggagcacactcccagatctcaagccaatac 25590634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 21854614 - 21854571
Alignment:
Q  211 tgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||    
T  21854614 tgagactttgaggaggagcacactcccagatccctagccaatac 21854571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 22760941 - 22760886
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| | ||| |||||||||||||||| ||||||| ||||||    
T  22760941 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaatac 22760886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 25021345 - 25021388
Alignment:
Q  211 tgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||| ||| |||||||||||||||| ||||||||||||||    
T  25021345 tgagactttgaggaggagcacactcccaggtcccaagccaatac 25021388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 30217958 - 30217903
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||||||||| | ||| ||||||||||| ||||||  ||||||||||    
T  30217958 agagaatcgaacttgagaccttgaggaggagcacacttccagatatcaagccaata 30217903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 33869441 - 33869500
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatacta 256  Q
    |||||||||||||  ||||| | ||||||||||||||| |||| || |||||||||||||    
T  33869441 gagagaatcgaaccagagaccttgagaaggagcacacttccaggtctcaagccaatacta 33869500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 37085547 - 37085602
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| ||| || ||||| | ||||||||||||| |||||||||||||||    
T  37085547 gagaatcgaacctgaaacctcgaggatgagcacactcccaaatcccaagccaatac 37085602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 43590985 - 43590930
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| | ||| |||||||||||||||  ||||||||||||||    
T  43590985 gagaatcgaacctgagacattgaggaggagcacactcccaagtcccaagccaatac 43590930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 5668567 - 5668629
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatactatat 259  Q
    ||||||||||| | |||||| ||||| ||||||||||| |||  |||||||||||||| ||||    
T  5668567 gagagaatcgatcctgagacctcgaggaggagcacacttccatgtcccaagccaataccatat 5668629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 5934197 - 5934147
Alignment:
Q  201 gaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaa 251  Q
    ||||||||| ||| || || || ||||||||||||||||||||||||||||    
T  5934197 gaatcgaacatgaaacctcaaggaggagcacactcccagatcccaagccaa 5934147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 21410711 - 21410753
Alignment:
Q  202 aatcgaacttgagacttcgagaaggagcacactcccagatccc 244  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||    
T  21410711 aatcgaatttgagacttcgaggaggagcacactctcagatccc 21410753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 22035486 - 22035424
Alignment:
Q  189 tgacacatgagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaa 251  Q
    ||||||| ||||||||||||| || | | ||||| |||||||||||| ||| |||||||||||    
T  22035486 tgacacaggagagaatcgaacctgggtcctcgaggaggagcacactctcaggtcccaagccaa 22035424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 29785300 - 29785354
Alignment:
Q  200 agaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||| |||||| | ||| ||||||||||| |||||||||||||| ||||    
T  29785300 agaatcgaacatgagaccttgaggaggagcacacttccagatcccaagcctatac 29785354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 37162346 - 37162396
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaag 247  Q
    |||||||||||||||||||| | |||||| |||||||||||| ||| ||||    
T  37162346 gagagaatcgaacttgagaccttgagaagaagcacactcccaaatctcaag 37162396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 39631929 - 39631867
Alignment:
Q  192 cacatgagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||| ||||||||||||| |||||| | ||| ||||||  |||||||| ||||||||||||||    
T  39631929 cacaagagagaatcgaacctgagaccttgaggaggagcttactcccaggtcccaagccaatac 39631867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 7721449 - 7721392
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| ||||| |||||||||| |||||| |||||||    
T  7721449 gagagaatcgaacatgagaccttgaggaggagtacactcccaggtcccaaaccaatac 7721392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 9608625 - 9608682
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||  | ||| ||||| |||||||||||||||||||| ||||    
T  9608625 gagagaatcgaacctgagatcttgaggaggaggacactcccagatcccaagcctatac 9608682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 9836197 - 9836254
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||  | ||| ||||| |||||||||||||||||||| ||||    
T  9836197 gagagaatcgaacctgagatcttgaggaggaggacactcccagatcccaagcctatac 9836254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 17113875 - 17113818
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||||||||||| | ||| || ||||||||||||| | | ||||||||||    
T  17113875 gagagaatcgaacttgagaccttgaggagaagcacactcccaggttctaagccaatac 17113818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 9183187 - 9183231
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagat 241  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||    
T  9183187 gagataatcgaacctgagactttgaggaggagcacactcccagat 9183231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 23301599 - 23301655
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||| |||||||||| || || |||||||||||||||  ||||||| ||||||    
T  23301599 agagaatcaaacttgagacctcaaggaggagcacactcccaagtcccaagtcaatac 23301655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 28236586 - 28236634
Alignment:
Q  206 gaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||| ||||| ||||| |||||| ||||||||| ||||||||||||||    
T  28236586 gaactagagacctcgaggaggagcgcactcccaggtcccaagccaatac 28236634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 30442567 - 30442511
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||| | |||| | ||| ||||||| |||||||| ||||||||||||||    
T  30442567 agagaatcgaacctcagaccttgaggaggagcaaactcccaggtcccaagccaatac 30442511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 49050489 - 49050545
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatact 255  Q
    ||||||||||| |||||| || || ||||| |||||| |||||||||||| ||||||    
T  49050489 gagaatcgaacctgagacctcaaggaggagtacactcgcagatcccaagctaatact 49050545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 19846 - 19900
Alignment:
Q  200 agaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||||||| || || ||||||| |||||||||||||||||||||||    
T  19846 agaatcgaacttgagacctcaaggaggagcagactcccagatcccaagccaatac 19900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 145913 - 145965
Alignment:
Q  201 gaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||  |||||| ||||||||||||||||||| || |||||| ||||||    
T  145913 gaatcgaatctgagacctcgagaaggagcacactcctaggtcccaaaccaata 145965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 13042 - 13099
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| ||||||||||||||||||| |||||||||||    
T  13042 gagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagccaatac 13099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 106128 - 106071
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||||| ||||||||||||| ||||||||||| | |||||||| |||||    
T  106128 gagagaatcgaactttagacttcgagaagcagcacactccctggtcccaagctaatac 106071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 157004 - 157040
Alignment:
Q  218 tcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  157004 tcgaggaggagcacactcccagatctcaagccaatac 157040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 10300 - 10243
Alignment:
Q  196 tgagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    |||||||||| ||||| |||||||||| ||  || |||||||||||||||||||||||    
T  10300 tgagagaatcaaacttaagacttcgaggagaggcgcactcccagatcccaagccaata 10243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 2468 - 2523
Alignment:
Q  199 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||| |||||| | ||| |||||||||||||||||||| || |||||||    
T  2468 gagaatcgaacctgagaccttgaggaggagcacactcccagatccaaaaccaatac 2523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 19958 - 20015
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| |||||| | ||| ||||||| |||||||| | ||||||||||||    
T  19958 gagagaatcgaacctgagaccttgaggaggagcatactcccaggttccaagccaatac 20015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 25343 - 25400
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||| |||||||| |||||| | |||||||||||||||||||  || |||||||||||    
T  25343 gagataatcgaacctgagaccttgagaaggagcacactcccaagtctcaagccaatac 25400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 41629 - 41686
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||| |||| |||||| ||||| ||||||| |||| |||||| |||||||||||    
T  41629 gagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaatac 41686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 49386 - 49329
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    ||||||||||||| ||| || ||||  |||||||||||| || |||||||||||||||    
T  49386 gagagaatcgaacctgatacctcgaagaggagcacactctcaaatcccaagccaatac 49329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 42517 - 42573
Alignment:
Q  198 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 254  Q
    |||||||||||| |||||||  ||| ||||||| |||||||||| ||||| ||||||    
T  42517 agagaatcgaacctgagactctgaggaggagcatactcccagattccaagtcaatac 42573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 14968 - 15023
Alignment:
Q  197 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaata 253  Q
    ||||||||||||| |||||||| ||| ||||||| |||||||| ||| |||||||||    
T  14968 gagagaatcgaacctgagactt-gaggaggagcatactcccagttcctaagccaata 15023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University