View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21015_low_2 (Length: 468)
Name: NF21015_low_2
Description: NF21015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21015_low_2 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 468
Target Start/End: Complemental strand, 33077998 - 33077526
Alignment:
| Q |
13 |
gagaagaagagtagtagacttggaagacataagaggaatgatatgattcagattccattaaagcaggttttagcatagattggtcgtagaaacgtcccag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33077998 |
gagaagaagagtagtagacttggaagacataagtggaatgatatgattcagattccattaaagcaggttttagcataaattggtcgtagaaacgtcccaa |
33077899 |
T |
|
| Q |
113 |
agattataaaaatattagattagcatagccaacgcggctcaatttatcggattagttagtttatctgttaaaataatgaattac-------ttaatgatt |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
33077898 |
agattattaaaatattagattagcatagccaacgcggctcaatttatcggattagttagtttatctgttaaaataatgaattactttttttttaaggaaa |
33077799 |
T |
|
| Q |
206 |
agtagtg--------gcagtaaatatcgtggacataaaataaggattccttgcagcaaacagcattcatccattaattcactatatgacaaaaagattga |
297 |
Q |
| |
|
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33077798 |
aataatgaattccttgcagtaaatatcgtggacataaaataaggattccttgcagcaaacagcattcatccattaattcactatatgacaaaaagattga |
33077699 |
T |
|
| Q |
298 |
aaaggaagattgaaaagcaacgcaactgacctttggttgaaaagcaacacgactgatagaaaaagaaagcagcgtga--tgtgttacgcagcatgactta |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | ||||||| ||| ||| |
|
|
| T |
33077698 |
aaaggaagattgaaaagcaacgcaactgacctttggttgaaaagcaacaccactgatagaaaaagaaagcagcgtgagttaaatcacgcagcgtgagtta |
33077599 |
T |
|
| Q |
396 |
agtcccgcagaaaatataactagcatgagttaacttacgctgaggtaatttcgatatttcagttgagagcgag |
468 |
Q |
| |
|
| || |||||||| ||||||||||||| | |||| | || |||||||||||||||||||||||||||||||| |
|
|
| T |
33077598 |
actcatgcagaaaacataactagcatgaatcaactcatgcagaggtaatttcgatatttcagttgagagcgag |
33077526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 40818984 - 40819119
Alignment:
| Q |
48 |
gaatgatatgattcagattccattaaagcaggttttagc--atagattggtcgtagaaacgtcccagagattataaaaatattagattagcatagccaac |
145 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
40818984 |
gaatgatatgattcatatcccattaaagcacgttttaggcaatagattggtcgtagaaacgtcccacagattataaaaatattagattagcattgccaac |
40819083 |
T |
|
| Q |
146 |
gcggctcaatttatcggattagttagtttatctgtt |
181 |
Q |
| |
|
||||||||||| |||||| | ||||||||| |||| |
|
|
| T |
40819084 |
gcggctcaattgttcggatgacttagtttatgtgtt |
40819119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 49360267 - 49360305
Alignment:
| Q |
263 |
tcatccattaattcactatatgacaaaaagattgaaaag |
301 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49360267 |
tcatctattaattcactatatgacaaaaagattgaaaag |
49360305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 49360294 - 49360338
Alignment:
| Q |
303 |
aagattgaaaagcaacgcaactgacctttggttgaaaagcaacac |
347 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
49360294 |
aagattgaaaagcaatgcaactggtctttggttgaaaagcaacac |
49360338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University