View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21015_low_6 (Length: 413)

Name: NF21015_low_6
Description: NF21015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21015_low_6
NF21015_low_6
[»] chr2 (27 HSPs)
chr2 (38-413)||(10348427-10348802)
chr2 (18-220)||(10372699-10372901)
chr2 (63-345)||(9283349-9283628)
chr2 (63-291)||(10336560-10336782)
chr2 (23-290)||(7114785-7115047)
chr2 (31-220)||(10353962-10354149)
chr2 (108-331)||(9329305-9329528)
chr2 (66-218)||(9316844-9316999)
chr2 (62-218)||(9060269-9060428)
chr2 (102-322)||(12018128-12018345)
chr2 (105-321)||(9275241-9275455)
chr2 (106-280)||(12011811-12011982)
chr2 (106-291)||(12005383-12005565)
chr2 (108-220)||(9321808-9321920)
chr2 (87-218)||(9357935-9358066)
chr2 (106-291)||(11986743-11986925)
chr2 (103-220)||(9292745-9292862)
chr2 (108-220)||(8572722-8572833)
chr2 (108-236)||(7612697-7612825)
chr2 (108-292)||(17565334-17565514)
chr2 (138-187)||(9365445-9365494)
chr2 (141-216)||(14551140-14551215)
chr2 (115-187)||(8578752-8578824)
chr2 (381-413)||(9357825-9357857)
chr2 (382-413)||(8572959-8572990)
chr2 (382-413)||(10353766-10353797)
chr2 (383-413)||(7115107-7115137)
[»] chr4 (3 HSPs)
chr4 (31-220)||(26575696-26575880)
chr4 (141-242)||(561965-562066)
chr4 (382-413)||(26575518-26575549)
[»] scaffold0667 (2 HSPs)
scaffold0667 (63-220)||(5276-5436)
scaffold0667 (382-413)||(5122-5153)
[»] chr3 (3 HSPs)
chr3 (87-218)||(37463341-37463472)
chr3 (106-291)||(39428633-39428809)
chr3 (382-412)||(37463144-37463174)
[»] chr8 (1 HSPs)
chr8 (63-211)||(41965897-41966045)
[»] chr1 (4 HSPs)
chr1 (123-220)||(29452586-29452683)
chr1 (123-211)||(29467060-29467148)
chr1 (87-211)||(29424040-29424164)
chr1 (87-211)||(29442558-29442682)
[»] chr5 (1 HSPs)
chr5 (106-216)||(36225571-36225681)


Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 38 - 413
Target Start/End: Complemental strand, 10348802 - 10348427
Alignment:
Q  38 ctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatca 137  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348802 ctaaaccctagcagaaccttccttctcattccttggaatggcggctgaacttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatca 10348703  T
Q  138 cttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctca 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348702 cttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctca 10348603  T
Q  238 tcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctatcattccactcaaccatcccttcaccaccaacatcgatcc 337  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  10348602 tcctccgtcacaacaccaccgatttctaccaactccatttccctaacctaaccaaatctatcattccactcaactatcccttcactaccaacatcgatcc 10348503  T
Q  338 ttccacgcggagccccaccgacctcctccgtaacagtaaaatgtctcttatcggttcatgtaacggcctcctcgcc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348502 ttccacgcggagccccaccgacctcctccgtaacagtaaaatgtctcttatcggttcatgtaacggcctcctcgcc 10348427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 10372901 - 10372699
Alignment:
Q  18 gaagtaagaaacaaaaaaccctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttct 117  Q
    |||| ||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  10372901 gaaggaagaaatgaaaaaccctaagccctagcagaaccttccttctccttctttgcaatggcggctgaacttccgcctgatattctcgccgaagtcttct 10372802  T
Q  118 cccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| | |||||||||||||||||||||  ||||    
T  10372801 cccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaaaa 10372702  T
Q  218 ttc 220  Q
    |||    
T  10372701 ttc 10372699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 63 - 345
Target Start/End: Original strand, 9283349 - 9283628
Alignment:
Q  63 tccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 162  Q
    ||||||||| |||||||| | || ||||||||||| || || ||||||||||||||| ||||||| || |||||||| ||||||||||||||||| || |    
T  9283349 tccttccttccaatggcgtccgatcttccgccggacatacttgccgaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttcta 9283448  T
Q  163 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgattt 262  Q
    ||||||||  |||| |||| ||||| | ||||||||||||||||||||| |||| ||| || || ||||| ||||||||||||||||| ||||   || |    
T  9283449 aatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaacttcaaactcatcctccgtcacaagacca---atct 9283545  T
Q  263 ctaccaactccatttcccttacctaaccaaatctatcattccactcaaccatcccttcaccaccaacatcgatccttccacgc 345  Q
    |||||||||| |||||||| ||||||||||||| || || || ||||||||||| |||||||||||||||||||||| |||||    
T  9283546 ctaccaactcgatttccctaacctaaccaaatccataataccgctcaaccatcctttcaccaccaacatcgatcctttcacgc 9283628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 63 - 291
Target Start/End: Complemental strand, 10336782 - 10336560
Alignment:
Q  63 tccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 162  Q
    ||||||||| ||||||||| |   ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10336782 tccttccttacaatggcggat---cttccgccggaaattctctccgaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaa 10336686  T
Q  163 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgattt 262  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||  ||||||| || ||||| |||||||||||||||| |||    |||||  |    
T  10336685 aatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaattttaacctcatcctccgtcgcaa---aaccgacct 10336589  T
Q  263 ctaccaactccatttcccttacctaacca 291  Q
    |||||| |||||||||||| |||||||||    
T  10336588 ctaccacctccatttccctaacctaacca 10336560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 23 - 290
Target Start/End: Original strand, 7114785 - 7115047
Alignment:
Q  23 aagaaacaaaaaaccctaaaccctagca-gaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccg 121  Q
    |||||||||||||||||||||||||| | ||||||| |  ||||||||    |||||||||||| ||||||||||| || ||  ||||||||||||| ||    
T  7114785 aagaaacaaaaaaccctaaaccctagaacgaaccttgc--ctccttcc----aatggcggctgatcttccgccggaaatactatccgaaatcttctctcg 7114878  T
Q  122 cttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattct 221  Q
    | |||| |||  ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||     
T  7114879 cctaccagtacgatcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattcc 7114978  T
Q  222 ctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacc 290  Q
     | ||||||||| |||||||||||||||| | || |||| |||||||||||||||||||| ||||||||    
T  7114979 ttcaatttcaacttcatcctccgtcacaagaacaacgatctctaccaactccatttccctaacctaacc 7115047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 10354149 - 10353962
Alignment:
Q  31 aaaaaccctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggt 130  Q
    |||||||||||||||||||||||||||| |||  ||||||| ||||||||||||| ||||| ||||| |||||| |||||||| | ||||||||||||||    
T  10354149 aaaaaccctaaaccctagcagaaccttcattc--cttccttacaatggcggctgaacttccaccggaaattctcaccgaaatcctttcccgcttaccggt 10354052  T
Q  131 aaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 220  Q
    || |||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||   ||||||||||||||||||||| | ||||||    
T  10354051 aatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattc 10353962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 108 - 331
Target Start/End: Complemental strand, 9329528 - 9329305
Alignment:
Q  108 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 207  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||| ||||  |||||||    
T  9329528 gaaatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttc 9329429  T
Q  208 acct---aaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctatcattcc 304  Q
    ||||   ||| ||||| || |||||||||||||||||   |||   ||  |||||| ||||||||||| || | ||| | ||||||||||| || |||||    
T  9329428 acctcaaaaataattccctcaatttcaacctcatcct---tcagctcaataccgatctctaccaactcgatcttcctaatctaaccaaatccatgattcc 9329332  T
Q  305 actcaaccatcccttcaccaccaacat 331  Q
    |||||||||||| |||| |||||||||    
T  9329331 actcaaccatcctttcagcaccaacat 9329305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 9316999 - 9316844
Alignment:
Q  66 ttccttgcaatggcggctgag---cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 162  Q
    |||||| |||||||||||||    ||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  9316999 ttccttccaatggcggctgacggtcttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaa 9316900  T
Q  163 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaat 218  Q
    ||||||||||||| ||||| ||||| | ||| ||||||||||||||||| ||||||    
T  9316899 aatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaat 9316844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 9060269 - 9060428
Alignment:
Q  62 ctccttccttgcaatggcggctgag---cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacc 158  Q
    |||||||||| |||||||||||||    ||||||||||| || || ||||||||||||||||||||||||||  |||||||||||||||||||||||||     
T  9060269 ctccttccttccaatggcggctgatgttcttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaact 9060368  T
Q  159 tcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaat 218  Q
    ||||||||||||||||||||||||||||| | ||| ||||  |||||| |||| ||||||    
T  9060369 tcaaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaat 9060428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 102 - 322
Target Start/End: Original strand, 12018128 - 12018345
Alignment:
Q  102 ctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatca 201  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||| | ||| |||| ||    
T  12018128 ctcgccgaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcacca 12018227  T
Q  202 accttcacctaaaaaa---ttctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctat 298  Q
    | ||||| || |||||    || || |||||||||||||||||||||||| |   |||| || ||||||||||||||||||||  ||||||||   |  |    
T  12018228 atcttcaactcaaaaactcatccctcaatttcaacctcatcctccgtcacga---cacccatctctaccaactccatttccctaccctaacca---ccgt 12018321  T
Q  299 cattccactcaaccatcccttcac 322  Q
    ||| |||||||||||||| |||||    
T  12018322 catcccactcaaccatcctttcac 12018345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 105 - 321
Target Start/End: Complemental strand, 9275455 - 9275241
Alignment:
Q  105 gccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacc 204  Q
    ||||||||||||||||| ||||| ||| ||||||||||| |||||||||||| |||||||||||||||||| || || ||||| | ||| ||||||||||    
T  9275455 gccgaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaacc 9275356  T
Q  205 ttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctatcattcc 304  Q
    |||| || |||||||| || |||||||||||||| || |  ||||||||  || |  ||||| ||||| |||||||| ||||||||||||  || || |     
T  9275355 ttcatctcaaaaattccctcaatttcaacctcattcttcaacacaacac--ccaaactctacgaactcaatttccctaacctaaccaaattcataataca 9275258  T
Q  305 actcaaccatcccttca 321  Q
    |||||||||||| ||||    
T  9275257 actcaaccatcctttca 9275241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 106 - 280
Target Start/End: Original strand, 12011811 - 12011982
Alignment:
Q  106 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 205  Q
    |||||||||||||||||||||    | ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||| |||| ||| ||    
T  12011811 ccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatct 12011910  T
Q  206 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttccc 280  Q
    |||||| ||||| ||||  || ||||||||||||||||| ||||||||||   || |||| ||||||||||||||    
T  12011911 tcacctcaaaaactctcacaacttcaacctcatcctccgccacaacacca---atctctatcaactccatttccc 12011982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 291
Target Start/End: Original strand, 12005383 - 12005565
Alignment:
Q  106 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 205  Q
    ||||||||||||||||||||||   | ||||||||||||||||||| ||||| ||| |||| ||||||||| |||||||||| | ||| |||| ||||||    
T  12005383 ccgaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaacct 12005482  T
Q  206 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacca 291  Q
    ||| |||||||||||||| ||| ||||||| |||||| | ||||| ||||   || ||| ||| |||||||||||| | |||||||    
T  12005483 tcatctaaaaaattctctcaatctcaaccttatcctcggccacaaaacca---atctcttccacctccatttccctaatctaacca 12005565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 9321920 - 9321808
Alignment:
Q  108 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 207  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| | | | |||||||||||||    
T  9321920 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttc 9321821  T
Q  208 acctaaaaaattc 220  Q
    | || ||||||||    
T  9321820 atctcaaaaattc 9321808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 9358066 - 9357935
Alignment:
Q  87 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 186  Q
    ||||||||||| || |||||| |||| || | ||||||||| ||||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||    
T  9358066 cttccgccggaaatactcgccaaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgatt 9357967  T
Q  187 cactcaaattcatcaaccttcacctaaaaaat 218  Q
    | | ||| ||||| ||||||||||| ||||||    
T  9357966 ctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 106 - 291
Target Start/End: Original strand, 11986743 - 11986925
Alignment:
Q  106 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 205  Q
    |||||||||||||||||||||    | ||||||||||||||||||| ||||| ||| |||| ||||||||| |||| ||||| | ||| |||| ||| ||    
T  11986743 ccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatct 11986842  T
Q  206 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacca 291  Q
    |||||| | ||| |||   || ||||||||||||||||||||||||||||   || |||| ||||||||||||||| |||||||||    
T  11986843 tcacctcagaaactctgacaacttcaacctcatcctccgtcacaacacca---atctctatcaactccatttccctaacctaacca 11986925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 103 - 220
Target Start/End: Complemental strand, 9292862 - 9292745
Alignment:
Q  103 tcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaa 202  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||| | ||  ||||  ||    
T  9292862 tcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaa 9292763  T
Q  203 ccttcacctaaaaaattc 220  Q
    ||||||||| ||||||||    
T  9292762 ccttcacctcaaaaattc 9292745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 8572722 - 8572833
Alignment:
Q  108 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 207  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||  |||||||||| | ||| |||| ||||||||    
T  8572722 gaaatcttctcccgcataccagtaaa-tcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttc 8572820  T
Q  208 acctaaaaaattc 220  Q
    |||| ||||||||    
T  8572821 acctcaaaaattc 8572833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 108 - 236
Target Start/End: Complemental strand, 7612825 - 7612697
Alignment:
Q  108 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 207  Q
    |||||| |||| |||||||||||| || | || ||||||||||||||||  || ||||| |||||||||||||| ||||| | ||| ||||  |||||||    
T  7612825 gaaatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttc 7612726  T
Q  208 acctaaaaaattctctaaatttcaacctc 236  Q
    |||| ||||| ||| ||||||||||||||    
T  7612725 acctcaaaaactctttaaatttcaacctc 7612697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 292
Target Start/End: Original strand, 17565334 - 17565514
Alignment:
Q  108 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 207  Q
    |||||| |||| |||||||| ||| |||| || |||||| |||||||||| || |||||||||||||  ||||| ||||| |  || |||| ||||||||    
T  17565334 gaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttc 17565433  T
Q  208 acctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaa 292  Q
    |||  ||||| ||| |||||||||||||||| ||||| |||||| |||   | ||||||||| |  |||||||| ||||||||||    
T  17565434 acc-caaaaactctttaaatttcaacctcattctccgccacaactcca---aattctaccaagttgatttccctaacctaaccaa 17565514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 9365494 - 9365445
Alignment:
Q  138 cttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattc 187  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattc 9365445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 14551215 - 14551140
Alignment:
Q  141 ctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaa 216  Q
    |||| |||||||||||| |||||||||||| ||||| |||||||||| | ||| |||||||| |||||||||||||    
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctaaaaa 14551140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 8578752 - 8578824
Alignment:
Q  115 tctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattc 187  Q
    ||||||||||||||||| |||| |||||||||||||||||||  || |||||||||  |||||| || |||||    
T  8578752 tctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattc 8578824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 9357857 - 9357825
Alignment:
Q  381 tctcttatcggttcatgtaacggcctcctcgcc 413  Q
    |||||||||||||||||||||||||||||||||    
T  9357857 tctcttatcggttcatgtaacggcctcctcgcc 9357825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 382 - 413
Target Start/End: Original strand, 8572959 - 8572990
Alignment:
Q  382 ctcttatcggttcatgtaacggcctcctcgcc 413  Q
    ||||||||||||||||||||||||||||||||    
T  8572959 ctcttatcggttcatgtaacggcctcctcgcc 8572990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 382 - 413
Target Start/End: Complemental strand, 10353797 - 10353766
Alignment:
Q  382 ctcttatcggttcatgtaacggcctcctcgcc 413  Q
    ||||||||||||||||||||||||||||||||    
T  10353797 ctcttatcggttcatgtaacggcctcctcgcc 10353766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 413
Target Start/End: Original strand, 7115107 - 7115137
Alignment:
Q  383 tcttatcggttcatgtaacggcctcctcgcc 413  Q
    |||||||||||||||||||||||||||||||    
T  7115107 tcttatcggttcatgtaacggcctcctcgcc 7115137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 26575880 - 26575696
Alignment:
Q  31 aaaaaccctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggt 130  Q
    ||||||||||||||||||   ||||||| |||  ||||||| ||||||||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||    
T  26575880 aaaaaccctaaaccctag---aaccttcattc--cttccttacaatggcggctgaacttccaccggaaattctcaccgaaatcttctcccgtttaccggt 26575786  T
Q  131 aaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 220  Q
    || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||   ||||||||||||||||||||| | ||||||    
T  26575785 aatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattc 26575696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 562066 - 561965
Alignment:
Q  141 ctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctcatcc 240  Q
    ||||||||||||| ||  |||||||  ||||||||| |||||||||| | ||| ||||  ||||||||||| ||||| || || ||||| ||||||||||    
T  562066 ctccgattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaactccctcaattttaacctcatcc 561967  T
Q  241 tc 242  Q
    ||    
T  561966 tc 561965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 382 - 413
Target Start/End: Complemental strand, 26575549 - 26575518
Alignment:
Q  382 ctcttatcggttcatgtaacggcctcctcgcc 413  Q
    ||||||||||||||||||||||||||||||||    
T  26575549 ctcttatcggttcatgtaacggcctcctcgcc 26575518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 5436 - 5276
Alignment:
Q  63 tccttccttgcaatggcggctgagc---ttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacct 159  Q
    ||||||||| |||||||| |||| |   |||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5436 tccttccttccaatggcgtctgaccgccttccgccggacacactcgcagaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaactt 5337  T
Q  160 caaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 220  Q
    ||||||||||||||||| |||||||||| | ||| ||||||||||||||||  ||||||||    
T  5336 caaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattc 5276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 382 - 413
Target Start/End: Complemental strand, 5153 - 5122
Alignment:
Q  382 ctcttatcggttcatgtaacggcctcctcgcc 413  Q
    ||||||||||||||||||||||||||||||||    
T  5153 ctcttatcggttcatgtaacggcctcctcgcc 5122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 37463472 - 37463341
Alignment:
Q  87 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 186  Q
    ||||||||||| || |||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  37463472 cttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgatt 37463373  T
Q  187 cactcaaattcatcaaccttcacctaaaaaat 218  Q
    | | ||| |||||||||||||| || ||||||    
T  37463372 ctcacaacttcatcaaccttcatctcaaaaat 37463341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 291
Target Start/End: Complemental strand, 39428809 - 39428633
Alignment:
Q  106 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 205  Q
    |||||||| ||||||||||||||||  |||| || |||| |||||||||||| ||||||| | |||||||||||||| |||| | ||| ||||     ||    
T  39428809 ccgaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaaatgagttaaatccttaatc-attcccacaacttca-----ct 39428716  T
Q  206 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacca 291  Q
    |||||| ||||| |  || || |||||||||||||| || ||||||  ||   || ||||||||||| |||||||| |||||||||    
T  39428715 tcacctcaaaaactacctcaacttcaacctcatccttcgccacaactgca---atctctaccaactcgatttccctaacctaacca 39428633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 412
Target Start/End: Complemental strand, 37463174 - 37463144
Alignment:
Q  382 ctcttatcggttcatgtaacggcctcctcgc 412  Q
    |||||||||||||||||||||||||||||||    
T  37463174 ctcttatcggttcatgtaacggcctcctcgc 37463144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 41965897 - 41966045
Alignment:
Q  63 tccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 162  Q
    ||||||||  ||||| ||| ||| || ||||| || || ||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||||| |    
T  41965897 tccttcctcacaatgacggttgatctaccgccagaaatactcgctgaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcga 41965996  T
Q  163 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 211  Q
    ||||||||  ||||||||||||||| | ||| |||||||||||||||||    
T  41965997 aatcacttcgatccttaatcgattcccacaacttcatcaaccttcacct 41966045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 29452586 - 29452683
Alignment:
Q  123 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 220  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||  |||||||    
T  29452586 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattc 29452683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 29467060 - 29467148
Alignment:
Q  123 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 211  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||    
T  29467060 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct 29467148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 211
Target Start/End: Complemental strand, 29424164 - 29424040
Alignment:
Q  87 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 186  Q
    ||||||||||| || ||| ||| |||| |||| |  ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||  |||||||||    
T  29424164 cttccgccggagatactcaccggaatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatctctaatcgatt 29424065  T
Q  187 cactcaaattcatcaaccttcacct 211  Q
    | | ||  |||||||| ||||||||    
T  29424064 cccacagcttcatcaagcttcacct 29424040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 29442558 - 29442682
Alignment:
Q  87 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 186  Q
    ||||||||||| || ||  ||| |||| |||| |  ||||||| | |||| || ||||||||||| ||||| || ||||||||| ||||| |||||||||    
T  29442558 cttccgccggagatacttaccggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgatt 29442657  T
Q  187 cactcaaattcatcaaccttcacct 211  Q
    | |  || |||||||| ||||||||    
T  29442658 cccataacttcatcaaacttcacct 29442682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 36225681 - 36225571
Alignment:
Q  106 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 205  Q
    |||||||| ||||||||||||  ||  |||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| ||||  || ||    
T  36225681 ccgaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatct 36225582  T
Q  206 tcacctaaaaa 216  Q
    |||||| ||||    
T  36225581 tcacctcaaaa 36225571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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